NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE109104 Query DataSets for GSE109104
Status Public on Jan 12, 2018
Title DNA methylation in hESC derived brain organoids and iPSC derived neurons, astrocytes and neural progenitors
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary We studied the impact of ZIKA virus infection on DNA methylation in whole organoids, organoid derived astrocytes, neurons neural progeniotors and hESC or iPSC derived astrocytes, neurons, neural progenotor cells
 
Overall design Examination of differences in DNA methylation upon ZIKV infection in whole organoid samples or specific cell types
 
Contributor(s) Janssens S, Schotsaert M, Karnik R, Balasubramaniam V, Dejosez M, Meissner A, García-Sastre A, Zwaka TP
Citation(s) 29435496
Submission date Jan 11, 2018
Last update date Mar 27, 2019
Contact name Sylvie Janssens
Organization name Mount Sinai School of Medicine
Department Department for Developmental and Regenerative Biology
Lab Zwaka lab
Street address 1452 Madison Avenue
City New York City
State/province NY
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (20)
GSM2931705 BS001 ZIKV
GSM2931706 BS002 MOCK
GSM2931707 BS003 CDI_astrocytes
Relations
BioProject PRJNA429640
SRA SRP128919

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109104_RAW.tar 1.2 Gb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap