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Series GSE108762 Query DataSets for GSE108762
Status Public on Jul 25, 2019
Title RRBS (Reduced Representation Bisulfite Sequencing) of Egr1-/- and Tet1-/- mouse frontal cortex
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary We performed methylome profiling for mouse frontal cortex tissues derived from 6~8 week old Egr1-/- and Tet1-/- mice.
 
Overall design RRBS of mouse frontal cortex tissue from 6~8 week old Egr1-/- and Tet1-/- mouse brain
 
Contributor(s) Xu X, Xie H
Citation(s) 31467272
Submission date Jan 04, 2018
Last update date Oct 24, 2019
Contact name zhixiong sun
E-mail(s) zs2422@cumc.columbia.edu
Organization name Columbia University
Department Psychiatry
Lab Xu&Gogos
Street address 3908 pardes building, NYSPI
City NY
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (4)
GSM2913034 RRBS_mm_fc_Egr1ko_rep1
GSM2913035 RRBS_mm_fc_Egr1ko_rep2
GSM2913036 RRBS_mm_fc_Tet1ko_rep1
This SubSeries is part of SuperSeries:
GSE108768 Egr1 Recruits Tet1 to Shape the Brain Methylome during Early Postnatal Development
Relations
BioProject PRJNA428509
SRA SRP128051

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108762_Egr1KO.merged.bedGraph.gz 65.7 Mb (ftp)(http) BEDGRAPH
GSE108762_Tet1KO.merged.bedGraph.gz 71.5 Mb (ftp)(http) BEDGRAPH
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Raw data are available in SRA
Processed data are available on Series record

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