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Series GSE108680 Query DataSets for GSE108680
Status Public on Jan 09, 2019
Title MARCKS and lnc-MARCKS act as inflammation regulators
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The goals of this study are to reveal the target transcriptome of MARCKS and lnc-MARCKS in TLR2 signaling pathway. We knocked down MARCKS, or over-expressed lnc-MARCKS in THP1-derived macrophages stimulated with Pam3CSK4 for 8 hours. And compared the transcriptomes of the editing cells with control cells
 
Overall design Transcriptome in MARCKS knock-down or lnc-MARCKS overexpressed cells
 
Contributor(s) Zhang Q, Chao T
Citation(s) 30918008
Submission date Jan 02, 2018
Last update date Apr 10, 2019
Contact name Qiong Zhang
E-mail qiz171@ucsd.edu
Organization name UCSD
Department Pediatrics
Lab Tariq Rana Lab
Street address 9500 Gilman Dr.
City La jolla
State/province California
ZIP/Postal code 92093
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (8)
GSM2910935 Mock_Pam3_1
GSM2910936 Mock_Pam3_2
GSM2910937 LncM_Pam3_1
Relations
BioProject PRJNA428249
SRA SRP127832

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108680_lncM_Pam3.DESeq_Analysis_summary.txt.gz 703.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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