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Series GSE108659 Query DataSets for GSE108659
Status Public on Mar 08, 2018
Title Analysis of differential gene expression during Bacillus subtilis spore outgrowth
Organisms Bacillus amyloliquefaciens; Bacillus subtilis
Experiment type Expression profiling by high throughput sequencing
Summary The transcriptome of 8 strains were studied during 7 stages of the Morphological phases of sporulation P0 = Resuspention of cells in sporulation medium; P1 = Onset of sporulation before asymmetric division; P2 = Visible asymmetric septum; P3 = Ongoing engulfment of the forespore compartment by the mother cell compartment of sporulating cells; P4 = Completed engulfment (engulfed phase-dark forespores are surrounded by the mother-cell cytoplasm); P5 = Maturation (ongoing dehydration of the forespore core seen as a transition of phase-dark forespores into phase-bright foresppores); P6 = Phase-bright forespores (sporulation almost completed, mother-cells contain phase-bright dehydrated forespores).
 
Overall design 8 strains 7 time points
 
Contributor(s) Krawczyk T, de Jong A
Citation(s) 26679589
Submission date Jan 02, 2018
Last update date Mar 08, 2018
Contact name Anne de Jong
E-mail anne.de.jong@rug.nl
Phone +31 50 363 2047
Organization name university of Groningen
Department Molecular Genetics
Street address Nijenborgh 7
City Groningen
ZIP/Postal code 9747 AG
Country Netherlands
 
Platforms (2)
GPL23851 Ion Torrent Proton (Bacillus subtilis)
GPL24453 Ion Torrent Proton (Bacillus amyloliquefaciens)
Samples (112)
GSM2909413 Bacillus amyloliquefaciens; B4140_T0A
GSM2909414 Bacillus amyloliquefaciens; B4140_T0B
GSM2909415 Bacillus amyloliquefaciens; B4140_T2A
Relations
BioProject PRJNA428231
SRA SRP127808

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108659_00.ncRNA_supplemented.gff.gz 197.2 Kb (ftp)(http) GFF
GSE108659_RAW.tar 12.5 Mb (http)(custom) TAR (of RPKM)
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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