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Series GSE108514 Query DataSets for GSE108514
Status Public on Dec 27, 2017
Title ChIP-Seq_PETAL
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To test Pbodies (anibodies screened from PETAL) for more applications, we performed ChIP-seq with selected Pbodies. ChIP-seq assays in HepG2 for Pbodies against SMRC1, SATB1 and NFIC were carried out.
 
Overall design ChIP-seq assays in HepG2 for Pbodies against three transcript factors (SMRC1, SATB1 and NFIC) were carried out. The results were compared with published data using commercial ChIP-seq antibodies.
 
Contributor(s) Han J, Zhao X
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Submission date Dec 26, 2017
Last update date Mar 21, 2019
Contact name Yang Li
E-mail(s) more_2351@sjtu.edu.cn
Organization name Shanghai Jiao Tong University
Street address Dongchuan Rd. 800
City Shanghai
ZIP/Postal code 200240
Country China
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (4)
GSM2902640 ChIP-seq for SMRC1
GSM2902641 ChIP-seq for SATB1
GSM2902642 ChIP-seq for NFIC
Relations
BioProject PRJNA427531
SRA SRP127542

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108514_RAW.tar 273.5 Mb (http)(custom) TAR (of BED, BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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