|
| Status |
Public on Mar 28, 2018 |
| Title |
Analysis of gene expression profile in the control and CHD7-knockdown hiPSC-derived lt-NES cells (scRNA-Seq) |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
CHARGE syndrome is a congenital disorder caused by mutations in Chromodomain Helicase DNA-binding domain 7 (CHD7) gene. We performed single cell RNA-seq analysis in CTRL and CHD7-knockdown lt-NES cells.
|
| |
|
| Overall design |
Single cell RNA-Seq profiling of control (shCTRL) and CHD7-knockdown (sh410 or sh411) cells.
|
| |
|
| Citation(s) |
29440260 |
| Submission date |
Dec 19, 2017 |
| Last update date |
Mar 27, 2019 |
| Contact name |
Tsukasa Sanosaka |
| E-mail(s) |
sanosaka@keio.jp
|
| Organization name |
Keio University School of Medicine
|
| Department |
Department of Physiology
|
| Street address |
35 Shinanomachi
|
| City |
Shinjuku-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
1608582 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (92)
|
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| This SubSeries is part of SuperSeries: |
| GSE111327 |
Chromatin remodeler CHD7 regulates the stem cell identity of human neural progenitors |
|
| Relations |
| BioProject |
PRJNA423024 |
| SRA |
SRP127035 |
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