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Series GSE108234 Query DataSets for GSE108234
Status Public on Jan 21, 2019
Title MS2-affinity purification coupled with RNA sequencing (MAPS) reveals SraL sRNA targetome in Salmonella Typhimurium
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Recently, we developed an in vivo technology to draw the interacting map of a specific small regulatory RNA (sRNA). We called it MAPS for MS2-affinity purification coupled with RNA sequencing. In this study, we performed MAPS with SraL sRNA (Salmonella Typhimurium SL1344).
 
Overall design Identification of RNAs co-purified with MS2-SraL in a sraL- strain. SraL (without MS2) was used as control.
 
Contributor(s) Eyraud A, Lalaouna D, Massé E
Citation(s) 30718400
Submission date Dec 18, 2017
Last update date Apr 22, 2019
Contact name Eric Massé
E-mail eric.masse@usherbrooke.ca
Organization name University of Sherbrooke
Department Biochemistry
Lab Eric Massé Laboratory
Street address 3201, Jean Mignault
City SHERBROOKE
State/province Québec
ZIP/Postal code J1E 4K8
Country Canada
 
Platforms (1)
GPL22775 Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)
Samples (2)
GSM2893436 MS2-SraL
GSM2893437 SraL
Relations
BioProject PRJNA422894
SRA SRP126963

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108234_MS2-SraL.txt.gz 23.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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