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Series GSE108233 Query DataSets for GSE108233
Status Public on Apr 12, 2018
Title Single cell analysis of Granuloma crypt epithelium
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of this study is to compare the cellular populations present within granuloma (Sca1+) and non-granuloma (Sca-1–) crypt epithelum arising from parasitic H polygyrus infections.
Overall design Single cell transcriptomes of Sca-1+(Granuloma) and Sca-1–(Non-granuloma) were generated from infected mice and then re-merged for population comparison
Contributor(s) Nusse Y, Savage A
Citation(s) 29950724
Submission date Dec 18, 2017
Last update date Mar 19, 2019
Contact name Ysbrand Nusse
Organization name UCSF
Street address 513 Parnassus Ave
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (2)
GSM2893434 Sca1pos
GSM2893435 Sca1neg
BioProject PRJNA422895
SRA SRP126962

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108233_Sca1_Expression_matrix_cells.csv.gz 600.5 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster0.csv.gz 40.1 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster1.csv.gz 35.6 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster10.csv.gz 21.6 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster11.csv.gz 13.6 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster12.csv.gz 15.9 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster13.csv.gz 12.2 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster14.csv.gz 8.3 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster15.csv.gz 6.4 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster16.csv.gz 3.7 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster17.csv.gz 2.7 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster18.csv.gz 2.1 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster19.csv.gz 325.5 Kb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster2.csv.gz 33.2 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster3.csv.gz 34.7 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster4.csv.gz 31.5 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster5.csv.gz 33.1 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster6.csv.gz 21.7 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster7.csv.gz 19.0 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster8.csv.gz 17.9 Mb (ftp)(http) CSV
GSE108233_Sca1_Expression_matrix_cluster9.csv.gz 19.3 Mb (ftp)(http) CSV
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