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Series GSE107147 Query DataSets for GSE107147
Status Public on Nov 24, 2017
Title DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells [ChIP-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We present the high resolution HiC study of genome folding in primary cells, specifically hematopoietic stem and progenitor cells. We investigated the relationship of chromosomal contacts with other epigenetic marks, particularly DNA methylation and histone modifications which is known to be important for appropriate stem cell differentiation.
 
Overall design We use histone ChIP-seq to probe relationship of chromosomal contacts and epigenetic modification.
 
Contributor(s) Reyes JM, Jeong M, Goodell MA, Aiden EL
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 20, 2017
Last update date May 15, 2019
Contact name Jianzhong Su
E-mail(s) jianzhongsu82@gmail.com
Phone 8322902241
Organization name Baylor college of Medicine
Street address 1 Baylor Plaza
City HOUSTON
State/province TEXAS
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (5)
GSM2861703 CD34_CTCF
GSM2861704 CD34_H3K27ac
GSM2861705 CD34_H3K27me3
This SubSeries is part of SuperSeries:
GSE104579 DNA methylation state is associated with the formation of loops and links in hematopoietic stem cells
Relations
BioProject PRJNA419461
SRA SRP125489

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107147_RAW.tar 220.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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