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Series GSE107011 Query DataSets for GSE107011
Status Public on Feb 06, 2019
Title RNA-Seq profiling of 29 immune cell types and peripheral blood mononuclear cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We performed RNA-Seq transcriptome profiling on 29 immune cell types consituting peripheral blood mononuclear cells (PBMCs) sorted from 4 Singaporean-Chinese individuals (S4 cohort). We also performed RNA-Seq and microarray transcriptome profiling of PBMCs from an extended cohort of 13 individuals (S13 cohort). The data was used first to characterize the transcriptomic signatures and relationships among the 29 immune cell types. Then we explored the difference in mRNA composition in terms of transcripts proportions and abundance. Lastly, we performed deep deconvolution for both microarray and RNA-Seq technologies.
Overall design Total RNA of 29 immune cell types (from 4 individuals) and peripheral blood mononuclear cells (PBMCs, from 13 individuals) was extracted for gene expression profiling. The 13 PBMCs samples were processed with both microarray and RNA-Seq platforms.
Contributor(s) Monaco G, Lee B, Xu W, Hwang Y, Poidinger M, Poidinger M, de Magalhães J, Larbi A
Citation(s) 30528453, 30726743
Submission date Nov 16, 2017
Last update date Feb 05, 2023
Contact name Gianni Monaco
Organization name Freiburg Medical Center
Street address Breisacher Straße
City Freiburg
ZIP/Postal code 79106
Country Germany
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (127)
GSM2859411 DZQV_CD8_naive_rep4
GSM2859412 DZQV_CD8_CM_rep4
GSM2859413 DZQV_CD8_EM_rep4
This SubSeries is part of SuperSeries:
GSE107019 Microarray and RNA-Seq profiling of immune cell types and peripheral blood mononuclear cells
BioProject PRJNA418779
SRA SRP125125

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Supplementary file Size Download File type/resource
GSE107011_Processed_data_TPM.txt.gz 14.7 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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