 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 29, 2018 |
| Title |
Timeseries of small RNA and mRNA expression during zebrafish heart regeneration |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Adult zebrafish are capable of regenerating cardiac tissue following ventricular resection within 30 days. We profiled both small RNA and mRNA expression in uninjured (0dpa), 1, 3, 7, 14, 21 and 30 days post amputation to study biological processes orchestrate each stage of regeneration.
|
| |
|
| Overall design |
Small and mRNA gene expression profiling during 0, 1, 3, 7, 14, 21 and 30 days post ventricular resection.
|
| |
|
| Contributor(s) |
King BL, Yin VP |
| Citation(s) |
29872545 |
| |
| Submission date |
Nov 14, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Benjamin L King |
| E-mail(s) |
benjamin.l.king@maine.edu
|
| Phone |
207-581-2803
|
| Organization name |
University of Maine
|
| Department |
Molecular and Biomedical Sciences
|
| Street address |
5735 Hitchner Hall
|
| City |
Orono |
| State/province |
ME |
| ZIP/Postal code |
04469 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
|
| Samples (42)
|
| GSM2856758 |
1dpa small RNA, rep1 |
| GSM2856759 |
1dpa small RNA, rep2 |
| GSM2856760 |
1dpa small RNA, rep3 |
| GSM2856761 |
3dpa small RNA, rep1 |
| GSM2856762 |
3dpa small RNA, rep2 |
| GSM2856763 |
3dpa small RNA, rep3 |
| GSM2856764 |
7dpa small RNA, rep1 |
| GSM2856765 |
7dpa small RNA, rep2 |
| GSM2856766 |
7dpa small RNA, rep3 |
| GSM2856767 |
14dpa small RNA, rep1 |
| GSM2856768 |
14dpa small RNA, rep2 |
| GSM2856769 |
14dpa small RNA, rep3 |
| GSM2856770 |
21dpa small RNA, rep1 |
| GSM2856771 |
21dpa small RNA, rep2 |
| GSM2856772 |
21dpa small RNA, rep3 |
| GSM2856773 |
30dpa small RNA, rep1 |
| GSM2856774 |
30dpa small RNA, rep2 |
| GSM2856775 |
30dpa small RNA, rep3 |
| GSM2856776 |
0dpa mRNA, rep1 |
| GSM2856777 |
0dpa mRNA, rep2 |
| GSM2856778 |
0dpa mRNA, rep3 |
| GSM2856779 |
1dpa mRNA, rep1 |
| GSM2856780 |
1dpa mRNA, rep2 |
| GSM2856781 |
1dpa mRNA, rep3 |
| GSM2856782 |
3dpa mRNA, rep1 |
| GSM2856783 |
3dpa mRNA, rep2 |
| GSM2856784 |
3dpa mRNA, rep3 |
| GSM2856785 |
7dpa mRNA, rep1 |
| GSM2856786 |
7dpa mRNA, rep2 |
| GSM2856787 |
7dpa mRNA, rep3 |
| GSM2856788 |
14dpa mRNA, rep1 |
| GSM2856789 |
14dpa mRNA, rep2 |
| GSM2856790 |
14dpa mRNA, rep3 |
| GSM2856791 |
21dpa mRNA, rep1 |
| GSM2856792 |
21dpa mRNA, rep2 |
| GSM2856793 |
21dpa mRNA, rep3 |
| GSM2856794 |
30dpa mRNA, rep1 |
| GSM2856795 |
30dpa mRNA, rep2 |
| GSM2856796 |
30dpa mRNA, rep3 |
|
| Relations |
| BioProject |
PRJNA418313 |
| SRA |
SRP124960 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE106884_mRNA_gene_TPM.txt.gz |
1.0 Mb |
(ftp)(http) |
TXT |
| GSE106884_miRNA_read_counts_miRGeneDB.txt.gz |
16.4 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...