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Series GSE106790 Query DataSets for GSE106790
Status Public on May 15, 2018
Title G9a regulates temporal preimplantation developmental program and lineage segregation in blastocyst
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Early mouse development is regulated and accompanied by dynamic changes in chromatin modifications, including G9a-mediated histone H3 lysine 9 dimethylation (H3K9me2). Previously, we provided insights into its role in post-implantation development (Zylicz et al., 2015). Here we explore the impact of depleting the maternally inherited G9a in oocytes on development shortly after fertilisation. We show that H3K9me2 normally accumulates at 8- cell stage to promote timely repression of a subset of 4-cell stage specific genes. Loss of maternal inheritance of G9a disrupts the gene regulatory network resulting in developmental delay and destabilisation of inner cell mass lineages by the late blastocyst stage. Our results indicate a vital role of this maternally inherited epigenetic regulator in creating conductive conditions for developmental progression and on cell fate choices.
 
Overall design Single embryo RNAseq was performed at E2.5 8-cell stage from 10 control and 10 maternally depleted Ehmt2 embryos.
 
Contributor(s) Zylicz JJ, Borensztein M, Dietmann S, Huang Y, Lee C, Surani MA
Citation(s) 29745895
Submission date Nov 13, 2017
Last update date May 15, 2019
Contact name Sabine Dietmann
Organization name Washington University School of Medicine
Street address 4565 McKinley Avenue
City St Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (20)
GSM2850294 G9a.cntr.1
GSM2850295 G9a.cntr.2
GSM2850296 G9a.cntr.3
Relations
BioProject PRJNA418079
SRA SRP124820

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE106790_RAW.tar 44.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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