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Series GSE106707 Query DataSets for GSE106707
Status Public on Aug 22, 2018
Title Single cell RNA sequencing of interneurons of the mouse dorsolateral striatum II
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary In order to investigate age-dependent mRNA expression in mouse striatal interneurons, we performed single cell RNA-seq on FACS-isolated fluorescently labeled cells from the dorsal striatum of two mouse lines, 5ht3aEGFP or Lhx6cre::R26R-tdTomat, from either P21-26 or P55-76 animals. We included the ventricular side of the striatum that contains adult born neuroblasts destined for the olfactory bulb.
 
Overall design 3417 single cells isolated from the mouse dorsal striatum.
 
Contributor(s) Munoz-Manchado AB, Zeisel A, Linnarsson S, Hjerling-Leffler J
Citation(s) 30134177
Submission date Nov 08, 2017
Last update date May 15, 2019
Contact name Sten Linnarsson
Organization name Karolinska Institutet
Department Medical Biochemistry and Biophysics
Lab Molecular Neurobiology
Street address Scheeles väg 1
City Stockholm
ZIP/Postal code 171 65
Country Sweden
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (3417)
GSM2845735 WG17009_A01-W02
GSM2845736 WG17009_A01-W03
GSM2845737 WG17009_A01-W04
This SubSeries is part of SuperSeries:
GSE106708 Single cell RNA sequencing of interneurons of the mouse dorsolateral striatum
Relations
BioProject PRJNA417709
SRA SRP124669

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE106707_expression_data.tab.gz 3.2 Mb (ftp)(http) TAB
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Raw data are available in SRA
Processed data is available on Series record

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