|
| Status |
Public on Feb 01, 2018 |
| Title |
ETV1 and FOXF1 cistrome in wildtype GIST48, GIST-T1, MDA-PCa2b, and ETV1 or FOXF1 knocked-down GIST48 cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIP profiles were generated by deep sequencing using Illumina HiSeq.
|
| |
|
| Overall design |
To examine the specific binding pattern of ETV1 and FOXF1 in different cell lineages, we performed performed ETV1 and FOXF1 ChIP-sequencing in GIST48 and MDA-PCa2b
To directly examine whether FOXF1 can modulate binding of other transcription factors in GIST, we performed ETV1 and FOXF1 ChIP-sequencing in GIST48 cells with ETV1 or FOXF1 knockdown.
|
| |
|
| Contributor(s) |
Chen Y, Chi P |
| Citation(s) |
29162563 |
| |
| Submission date |
Nov 07, 2017 |
| Last update date |
Mar 18, 2022 |
| Contact name |
Yuedan Chen |
| E-mail(s) |
cheny2@mskcc.org
|
| Phone |
9178682542
|
| Organization name |
Memorial Sloan Kettering Cancer Center
|
| Department |
HOPP
|
| Lab |
Ping Chi
|
| Street address |
417 E 68TH ST., Room 527
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
11101 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (23)
|
|
| This SubSeries is part of SuperSeries: |
| GSE106626 |
FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST) |
|
| Relations |
| BioProject |
PRJNA417539 |
| SRA |
SRP124660 |
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