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Series GSE106624 Query DataSets for GSE106624
Status Public on Feb 01, 2018
Title ETV1 and FOXF1 cistrome in wildtype GIST48, GIST-T1, MDA-PCa2b, and ETV1 or FOXF1 knocked-down GIST48 cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP profiles were generated by deep sequencing using Illumina HiSeq.
Overall design To examine the specific binding pattern of ETV1 and FOXF1 in different cell lineages, we performed performed ETV1 and FOXF1 ChIP-sequencing in GIST48 and MDA-PCa2b
To directly examine whether FOXF1 can modulate binding of other transcription factors in GIST, we performed ETV1 and FOXF1 ChIP-sequencing in GIST48 cells with ETV1 or FOXF1 knockdown.
Contributor(s) Chen Y, Chi P
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Submission date Nov 07, 2017
Last update date Mar 27, 2019
Contact name Yuedan Chen
Phone 9178682542
Organization name Memorial Sloan Kettering Cancer Center
Department HOPP
Lab Ping Chi
Street address 417 E 68TH ST., Room 527
City New York
State/province NY
ZIP/Postal code 11101
Country USA
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (23)
GSM2844025 GIST48-input
GSM2844026 GIST48-FOXF1
GSM2844027 GIST-T1-input-1
This SubSeries is part of SuperSeries:
GSE106626 FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST)
BioProject PRJNA417539
SRA SRP124660

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE106624_RAW.tar 3.6 Gb (http)(custom) TAR (of BIGWIG, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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