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| Status |
Public on Feb 19, 2018 |
| Title |
Affymetrix SNP array data for wild Dutch great tits (Parus major) |
| Organism |
Parus major |
| Experiment type |
Genome variation profiling by SNP array
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| Summary |
The great tit is a widely studied passerine bird species in ecology that, in the past decades, has provided important insights into speciation, phenology, behavior and microevolution. After completion of the great tit genome sequence, a customized high density 650k SNP array was developed enabling more detailed genomic studies in this species.
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| Overall design |
Thousands of Dutch great tits were genotyped, including wild and captive samples. This dataset allowed studies on genomic structure and association with phenotypes on this species.
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| Contributor(s) |
da Silva VH, Laine VN, Bosse M, van Oers K, Dibbits B, Visser ME, Crooijmans RP, Groenen MA |
| Citation(s) |
29703149 |
| Submission date |
Oct 18, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Veronika Laine |
| E-mail(s) |
v.laine@nioo.knaw.nl
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| Organization name |
NIOO-KNAW
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| Department |
Animal Ecology
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| Street address |
Droevendaalsesteeg 10
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| City |
Wageningen |
| ZIP/Postal code |
6708 PB |
| Country |
Netherlands |
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| Platforms (1) |
| GPL24144 |
[Axiom_Great Tit] Affymetrix Axiom Great Tit 650K SNP Genotyping Array |
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| Samples (3116)
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| Relations |
| BioProject |
PRJNA415009 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE105131_RAW.tar |
35.7 Gb |
(http)(custom) |
TAR (of CEL) |
| GSE105131_SamValuesAll.txt.gz |
2.2 Gb |
(ftp)(http) |
TXT |
| Processed data are available on Series record |
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