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Series GSE104590 Query DataSets for GSE104590
Status Public on Feb 08, 2018
Title Verticillium dahliae-Arabidopsis interaction causes changes in gene expression profiles and jasmonate levels on different time scales
Organisms Arabidopsis thaliana; Verticillium dahliae
Experiment type Expression profiling by high throughput sequencing
Summary Verticillium dahliae is a soil-borne vascular pathogen that causes severe wilt symptoms in a wide range of plants. Co-culture of the fungus with Arabidopsis roots for 24 hours induces many changes in the gene expression profiles of both partners, even before defense-related phytohormone levels are induced in the plant. Both partners reprogram sugar and amino acid metabolism, activate genes for signal perception and transduction, and induce defense and stress responsive genes. Furthermore, analysis of Arabidopsis expression profiles suggests a redirection from growth to defense. The plant and fungal genes that rapidly respond to the presence of the partner might be crucial for early recognition steps and the future development of the interaction. Thus they are potential targets for the control of V. dahliae-induced wilt diseases.
 
Overall design The aim of this study was to identify important targets regulated in both partners in the initial phase of interaction (24h). After 24 h of co-cultivation the fungus colonizes the plant root and first penetration of plant tissue by the fungus is visible while the vascular tissue of the plant is not yet colonized (pre-vascular phase).
Web link https://www.frontiersin.org/articles/10.3389/fmicb.2018.00217/abstract
 
Contributor(s) Scholz SS, Schmidt-Heck W, Guthke R, Oelmüller R
Citation(s) 29497409
Submission date Oct 04, 2017
Last update date May 15, 2019
Contact name Sandra S Scholz
E-mail(s) s.scholz@uni-jena.de
Organization name Friedrich-Schiller-University Jena
Department Plantphysiology
Lab Oelmüller
Street address Dornburger Straße 159
City Jena
ZIP/Postal code 07743
Country Germany
 
Platforms (2)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
GPL24077 Illumina HiSeq 2000 (Verticillium dahliae)
Samples (9)
GSM2803874 ATH_24h_n=1
GSM2803875 ATH+VDA_24h_n=1
GSM2803876 ATH_24h_n=2
Relations
BioProject PRJNA413141
SRA SRP119401

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104590_DEGs_DualRNASeq_ATH-VDA.xlsx 6.3 Mb (ftp)(http) XLSX
GSE104590_RawCounts_featureCounts.xlsx 1.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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