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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 13, 2017 |
| Title |
Transcriptome analysis of single cells from the developing mouse dentate gyrus |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA sequencing was performed on 24185 single cells from dentate gyrus of CD-1, C57Bl/6, or hGFAP-GFP reporter mice, sampled at ages ranging from embryonal day 16.5 to postnatal day 132, with the aim of comparing peri- and postnatal neurogenesis in the dentate gyrus
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| |
|
| Overall design |
24185 single cells isolated from the dentate gyrus of mice
|
| |
|
| Contributor(s) |
Hochgerner H, Zeisel A, Linnarsson S |
| Citation(s) |
29335606 |
| Submission date |
Sep 27, 2017 |
| Last update date |
Mar 19, 2019 |
| Contact name |
Sten Linnarsson |
| Organization name |
Karolinska Institutet
|
| Department |
Medical Biochemistry and Biophysics
|
| Lab |
Molecular Neurobiology
|
| Street address |
Scheeles väg 1
|
| City |
Stockholm |
| ZIP/Postal code |
171 65 |
| Country |
Sweden |
| |
|
| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (232)
|
| GSM2795228 |
E16.5,CD-1,Immature-GABA-1 |
| GSM2795229 |
E16.5,CD-1,Immature-GC-1 |
| GSM2795230 |
E16.5,CD-1,Immature-Pyr-1 |
| GSM2795231 |
E16.5,CD-1,Immature-Pyr-2 |
| GSM2795232 |
E16.5,CD-1,Immature-Pyr-3 |
| GSM2795233 |
E16.5,CD-1,Immature-Pyr-4 |
| GSM2795234 |
E16.5,CD-1,Immature-Pyr-5 |
| GSM2795235 |
E16.5,CD-1,Immature-Pyr-6 |
| GSM2795236 |
E16.5,CD-1,Immature-Pyr-7 |
| GSM2795237 |
E16.5,CD-1,Immature-Pyr-8 |
| GSM2795238 |
E16.5,CD-1,MiCajal-Retziusoglia-1 |
| GSM2795239 |
E16.5,CD-1,Neuroblast-1 |
| GSM2795240 |
E16.5,CD-1,Neuroblast-2 |
| GSM2795241 |
E16.5,CD-1,OPC-1 |
| GSM2795242 |
E16.5,CD-1,PVM-1 |
| GSM2795243 |
E16.5,CD-1,RGL_young-1 |
| GSM2795244 |
E16.5,CD-1,VLMC-1 |
| GSM2795245 |
E16.5,CD-1,nIPC-1 |
| GSM2795246 |
E16.5,CD-1,nIPC-perin-1 |
| GSM2795247 |
P0,CD-1,Cajal-Retzius-1 |
| GSM2795248 |
P0,CD-1,Endothelial-1 |
| GSM2795249 |
P0,CD-1,Ependymal-1 |
| GSM2795250 |
P0,CD-1,Immature-Astro-1 |
| GSM2795251 |
P0,CD-1,Immature-GABA-1 |
| GSM2795252 |
P0,CD-1,Immature-GABA-2 |
| GSM2795253 |
P0,CD-1,Immature-GABA-3 |
| GSM2795254 |
P0,CD-1,Immature-GC-1 |
| GSM2795255 |
P0,CD-1,Immature-GC-2 |
| GSM2795256 |
P0,CD-1,Immature-GC-3 |
| GSM2795257 |
P0,CD-1,Immature-Pyr-1 |
| GSM2795258 |
P0,CD-1,Immature-Pyr-10 |
| GSM2795259 |
P0,CD-1,Immature-Pyr-11 |
| GSM2795260 |
P0,CD-1,Immature-Pyr-12 |
| GSM2795261 |
P0,CD-1,Immature-Pyr-2 |
| GSM2795262 |
P0,CD-1,Immature-Pyr-3 |
| GSM2795263 |
P0,CD-1,Immature-Pyr-4 |
| GSM2795264 |
P0,CD-1,Immature-Pyr-5 |
| GSM2795265 |
P0,CD-1,Immature-Pyr-6 |
| GSM2795266 |
P0,CD-1,Immature-Pyr-7 |
| GSM2795267 |
P0,CD-1,Immature-Pyr-8 |
| GSM2795268 |
P0,CD-1,Immature-Pyr-9 |
| GSM2795269 |
P0,CD-1,MiCajal-Retziusoglia-1 |
| GSM2795270 |
P0,CD-1,Neuroblast-1 |
| GSM2795271 |
P0,CD-1,Neuroblast-2 |
| GSM2795272 |
P0,CD-1,Neuroblast-3 |
| GSM2795273 |
P0,CD-1,OPC-1 |
| GSM2795274 |
P0,CD-1,PVM-1 |
| GSM2795275 |
P0,CD-1,RGL_young-1 |
| GSM2795276 |
P0,CD-1,RGL_young-2 |
| GSM2795277 |
P0,CD-1,VLMC-1 |
| GSM2795278 |
P0,CD-1,nIPC-1 |
| GSM2795279 |
P0,CD-1,nIPC-perin-1 |
| GSM2795280 |
P120,hGFAP-GFP,Astro-adult-1 |
| GSM2795281 |
P120,hGFAP-GFP,Astro-adult-2 |
| GSM2795282 |
P120,hGFAP-GFP,Astro-juv-1 |
| GSM2795283 |
P120,hGFAP-GFP,CA3-Pyr-1 |
| GSM2795284 |
P120,hGFAP-GFP,Cajal-Retzius-1 |
| GSM2795285 |
P120,hGFAP-GFP,Endothelial-1 |
| GSM2795286 |
P120,hGFAP-GFP,Ependymal-1 |
| GSM2795287 |
P120,hGFAP-GFP,GABA-1 |
| GSM2795288 |
P120,hGFAP-GFP,GC-adult-1 |
| GSM2795289 |
P120,hGFAP-GFP,GC-juv-1 |
| GSM2795290 |
P120,hGFAP-GFP,Immature-GABA-1 |
| GSM2795291 |
P120,hGFAP-GFP,Immature-GC-1 |
| GSM2795292 |
P120,hGFAP-GFP,MOL-1 |
| GSM2795293 |
P120,hGFAP-GFP,MiCajal-Retziusoglia-1 |
| GSM2795294 |
P120,hGFAP-GFP,NFOL-1 |
| GSM2795295 |
P120,hGFAP-GFP,Neuroblast-1 |
| GSM2795296 |
P120,hGFAP-GFP,OPC-1 |
| GSM2795297 |
P120,hGFAP-GFP,OPC-2 |
| GSM2795298 |
P120,hGFAP-GFP,PVM-1 |
| GSM2795299 |
P120,hGFAP-GFP,RGL-1 |
| GSM2795300 |
P120,hGFAP-GFP,nIPC-1 |
| GSM2795301 |
P120,hGFAP-GFP,nIPC-perin-1 |
| GSM2795302 |
P132,hGFAP-GFP,Astro-adult-1 |
| GSM2795303 |
P132,hGFAP-GFP,Astro-adult-2 |
| GSM2795304 |
P132,hGFAP-GFP,Astro-adult-3 |
| GSM2795305 |
P132,hGFAP-GFP,Astro-adult-4 |
| GSM2795306 |
P132,hGFAP-GFP,Astro-juv-1 |
| GSM2795307 |
P132,hGFAP-GFP,CA3-Pyr-1 |
| GSM2795308 |
P132,hGFAP-GFP,Cajal-Retzius-1 |
| GSM2795309 |
P132,hGFAP-GFP,Endothelial-1 |
| GSM2795310 |
P132,hGFAP-GFP,Ependymal-1 |
| GSM2795311 |
P132,hGFAP-GFP,GABA-1 |
| GSM2795312 |
P132,hGFAP-GFP,GC-adult-1 |
| GSM2795313 |
P132,hGFAP-GFP,GC-adult-10 |
| GSM2795314 |
P132,hGFAP-GFP,GC-adult-11 |
| GSM2795315 |
P132,hGFAP-GFP,GC-adult-2 |
| GSM2795316 |
P132,hGFAP-GFP,GC-adult-3 |
| GSM2795317 |
P132,hGFAP-GFP,GC-adult-4 |
| GSM2795318 |
P132,hGFAP-GFP,GC-adult-5 |
| GSM2795319 |
P132,hGFAP-GFP,GC-adult-6 |
| GSM2795320 |
P132,hGFAP-GFP,GC-adult-7 |
| GSM2795321 |
P132,hGFAP-GFP,GC-adult-8 |
| GSM2795322 |
P132,hGFAP-GFP,GC-adult-9 |
| GSM2795323 |
P132,hGFAP-GFP,GC-juv-1 |
| GSM2795324 |
P132,hGFAP-GFP,Immature-GC-1 |
| GSM2795325 |
P132,hGFAP-GFP,Immature-Pyr-1 |
| GSM2795326 |
P132,hGFAP-GFP,MOL-1 |
| GSM2795327 |
P132,hGFAP-GFP,MiCajal-Retziusoglia-1 |
| GSM2795328 |
P132,hGFAP-GFP,NFOL-1 |
| GSM2795329 |
P132,hGFAP-GFP,Neuroblast-1 |
| GSM2795330 |
P132,hGFAP-GFP,OPC-1 |
| GSM2795331 |
P132,hGFAP-GFP,PVM-1 |
| GSM2795332 |
P132,hGFAP-GFP,RGL-1 |
| GSM2795333 |
P132,hGFAP-GFP,RGL_young-1 |
| GSM2795334 |
P132,hGFAP-GFP,VLMC-1 |
| GSM2795335 |
P132,hGFAP-GFP,nIPC-1 |
| GSM2795336 |
P18,CD-1,Astro-adult-1 |
| GSM2795337 |
P18,CD-1,Astro-juv-1 |
| GSM2795338 |
P18,CD-1,CA3-Pyr-1 |
| GSM2795339 |
P18,CD-1,Cajal-Retzius-1 |
| GSM2795340 |
P18,CD-1,Endothelial-1 |
| GSM2795341 |
P18,CD-1,Ependymal-1 |
| GSM2795342 |
P18,CD-1,GABA-1 |
| GSM2795343 |
P18,CD-1,GC-adult-1 |
| GSM2795344 |
P18,CD-1,GC-juv-1 |
| GSM2795345 |
P18,CD-1,GC-juv-2 |
| GSM2795346 |
P18,CD-1,GC-juv-3 |
| GSM2795347 |
P18,CD-1,GC-juv-4 |
| GSM2795348 |
P18,CD-1,GC-juv-5 |
| GSM2795349 |
P18,CD-1,GC-juv-6 |
| GSM2795350 |
P18,CD-1,GC-juv-7 |
| GSM2795351 |
P18,CD-1,GC-juv-8 |
| GSM2795352 |
P18,CD-1,Immature-Astro-1 |
| GSM2795353 |
P18,CD-1,Immature-GC-1 |
| GSM2795354 |
P18,CD-1,Immature-GC-2 |
| GSM2795355 |
P18,CD-1,Immature-Pyr-1 |
| GSM2795356 |
P18,CD-1,MOL-1 |
| GSM2795357 |
P18,CD-1,MiCajal-Retziusoglia-1 |
| GSM2795358 |
P18,CD-1,NFOL-1 |
| GSM2795359 |
P18,CD-1,Neuroblast-1 |
| GSM2795360 |
P18,CD-1,OPC-1 |
| GSM2795361 |
P18,CD-1,PVM-1 |
| GSM2795362 |
P18,CD-1,RGL-1 |
| GSM2795363 |
P18,CD-1,RGL_young-1 |
| GSM2795364 |
P18,CD-1,VLMC-1 |
| GSM2795365 |
P18,CD-1,nIPC-1 |
| GSM2795366 |
P18,CD-1,nIPC-perin-1 |
| GSM2795367 |
P19,C57Bl/6,Astro-adult-1 |
| GSM2795368 |
P19,C57Bl/6,Astro-juv-1 |
| GSM2795369 |
P19,C57Bl/6,CA3-Pyr-1 |
| GSM2795370 |
P19,C57Bl/6,Cajal-Retzius-1 |
| GSM2795371 |
P19,C57Bl/6,Endothelial-1 |
| GSM2795372 |
P19,C57Bl/6,Ependymal-1 |
| GSM2795373 |
P19,C57Bl/6,GABA-1 |
| GSM2795374 |
P19,C57Bl/6,GC-adult-1 |
| GSM2795375 |
P19,C57Bl/6,GC-adult-2 |
| GSM2795376 |
P19,C57Bl/6,GC-juv-1 |
| GSM2795377 |
P19,C57Bl/6,GC-juv-2 |
| GSM2795378 |
P19,C57Bl/6,GC-juv-3 |
| GSM2795379 |
P19,C57Bl/6,GC-juv-4 |
| GSM2795380 |
P19,C57Bl/6,Immature-GC-1 |
| GSM2795381 |
P19,C57Bl/6,MOL-1 |
| GSM2795382 |
P19,C57Bl/6,MiCajal-Retziusoglia-1 |
| GSM2795383 |
P19,C57Bl/6,NFOL-1 |
| GSM2795384 |
P19,C57Bl/6,Neuroblast-1 |
| GSM2795385 |
P19,C57Bl/6,OPC-1 |
| GSM2795386 |
P19,C57Bl/6,PVM-1 |
| GSM2795387 |
P19,C57Bl/6,RGL-1 |
| GSM2795388 |
P19,C57Bl/6,VLMC-1 |
| GSM2795389 |
P19,C57Bl/6,nIPC-1 |
| GSM2795390 |
P19,C57Bl/6,nIPC-perin-1 |
| GSM2795391 |
P23,CD-1,Astro-adult-1 |
| GSM2795392 |
P23,CD-1,Astro-juv-1 |
| GSM2795393 |
P23,CD-1,Astro-juv-2 |
| GSM2795394 |
P23,CD-1,CA3-Pyr-1 |
| GSM2795395 |
P23,CD-1,Cajal-Retzius-1 |
| GSM2795396 |
P23,CD-1,Endothelial-1 |
| GSM2795397 |
P23,CD-1,Ependymal-1 |
| GSM2795398 |
P23,CD-1,GABA-1 |
| GSM2795399 |
P23,CD-1,GC-adult-1 |
| GSM2795400 |
P23,CD-1,GC-juv-1 |
| GSM2795401 |
P23,CD-1,GC-juv-2 |
| GSM2795402 |
P23,CD-1,GC-juv-3 |
| GSM2795403 |
P23,CD-1,GC-juv-4 |
| GSM2795404 |
P23,CD-1,GC-juv-5 |
| GSM2795405 |
P23,CD-1,GC-juv-6 |
| GSM2795406 |
P23,CD-1,Immature-Astro-1 |
| GSM2795407 |
P23,CD-1,Immature-GABA-1 |
| GSM2795408 |
P23,CD-1,Immature-GC-1 |
| GSM2795409 |
P23,CD-1,Immature-GC-2 |
| GSM2795410 |
P23,CD-1,Immature-Pyr-1 |
| GSM2795411 |
P23,CD-1,MOL-1 |
| GSM2795412 |
P23,CD-1,MiCajal-Retziusoglia-1 |
| GSM2795413 |
P23,CD-1,NFOL-1 |
| GSM2795414 |
P23,CD-1,Neuroblast-1 |
| GSM2795415 |
P23,CD-1,OPC-1 |
| GSM2795416 |
P23,CD-1,PVM-1 |
| GSM2795417 |
P23,CD-1,RGL-1 |
| GSM2795418 |
P23,CD-1,RGL_young-1 |
| GSM2795419 |
P23,CD-1,VLMC-1 |
| GSM2795420 |
P23,CD-1,nIPC-1 |
| GSM2795421 |
P23,CD-1,nIPC-perin-1 |
| GSM2795422 |
P5,CD-1,CA3-Pyr-1 |
| GSM2795423 |
P5,CD-1,Cajal-Retzius-1 |
| GSM2795424 |
P5,CD-1,Endothelial-1 |
| GSM2795425 |
P5,CD-1,Ependymal-1 |
| GSM2795426 |
P5,CD-1,GABA-1 |
| GSM2795427 |
P5,CD-1,GC-juv-1 |
| GSM2795428 |
P5,CD-1,Immature-Astro-1 |
| GSM2795429 |
P5,CD-1,Immature-Astro-2 |
| GSM2795430 |
P5,CD-1,Immature-Astro-3 |
| GSM2795431 |
P5,CD-1,Immature-GABA-1 |
| GSM2795432 |
P5,CD-1,Immature-GABA-2 |
| GSM2795433 |
P5,CD-1,Immature-GC-1 |
| GSM2795434 |
P5,CD-1,Immature-GC-2 |
| GSM2795435 |
P5,CD-1,Immature-GC-3 |
| GSM2795436 |
P5,CD-1,Immature-GC-4 |
| GSM2795437 |
P5,CD-1,Immature-GC-5 |
| GSM2795438 |
P5,CD-1,Immature-GC-6 |
| GSM2795439 |
P5,CD-1,Immature-GC-7 |
| GSM2795440 |
P5,CD-1,Immature-Pyr-1 |
| GSM2795441 |
P5,CD-1,Immature-Pyr-2 |
| GSM2795442 |
P5,CD-1,Immature-Pyr-3 |
| GSM2795443 |
P5,CD-1,Immature-Pyr-4 |
| GSM2795444 |
P5,CD-1,MOL-1 |
| GSM2795445 |
P5,CD-1,MiCajal-Retziusoglia-1 |
| GSM2795446 |
P5,CD-1,NFOL-1 |
| GSM2795447 |
P5,CD-1,Neuroblast-1 |
| GSM2795448 |
P5,CD-1,Neuroblast-2 |
| GSM2795449 |
P5,CD-1,Neuroblast-3 |
| GSM2795450 |
P5,CD-1,OPC-1 |
| GSM2795451 |
P5,CD-1,PVM-1 |
| GSM2795452 |
P5,CD-1,RGL_young-1 |
| GSM2795453 |
P5,CD-1,RGL_young-2 |
| GSM2795454 |
P5,CD-1,VLMC-1 |
| GSM2795455 |
P5,CD-1,nIPC-1 |
| GSM2795456 |
P5,CD-1,nIPC-perin-1 |
|
| This SubSeries is part of SuperSeries: |
| GSE95753 |
Transcriptome analysis of single cells from the mouse dentate gyrus |
|
| Relations |
| BioProject |
PRJNA412365 |
| SRA |
SRP118985 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE104323_10X_expression_data_V2.tab.gz |
45.5 Mb |
(ftp)(http) |
TAB |
| GSE104323_metadata_barcodes_24185cells.txt.gz |
463.7 Kb |
(ftp)(http) |
TXT |
| Raw data are available in SRA |
| Processed data is available on Series record |
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