|
| Status |
Public on Nov 27, 2019 |
| Title |
Genome-wide TFBS (Transcription Factor Binding Site) map analysis in HepG2 cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed Chip-Seq analysis of 208 Factors in HepG2, using ENCODE Consortium Data with 2 replicates and 2 controls for each factors, to study transcription factor landscape within single cell type.
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| |
|
| Overall design |
ChipSeq data was produced by ENCODE Production Lab and submitted to ENCODE Data Coordination Center. Each of 208 TFs/DNA associated proteins included in this study were processed by the study group itself to generate only peaks passing IDR cutoff of 0.02 FDR(false discovery rate).
An alternative analysis of ENCODE data.
|
| Web link |
http://32728244
|
| |
|
| Contributor(s) |
Partridge EC, Chhetri SB, Myers RM, Mendenhall EM |
| Citation(s) |
32728244 |
| |
| Submission date |
Sep 26, 2017 |
| Last update date |
Apr 03, 2023 |
| Contact name |
Eric M Mendenhall |
| E-mail(s) |
emendenhall@hudsonalpha.org
|
| Organization name |
HudsonAlpha Institute
|
| Lab |
Mendenhall Lab
|
| Street address |
601 Genome Way Northwest
|
| City |
Huntsville |
| State/province |
AL |
| ZIP/Postal code |
35806 |
| Country |
USA |
| |
|
| Platforms (6)
|
| GPL9052 |
Illumina Genome Analyzer (Homo sapiens) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (248)
|
|
| Relations |
| BioProject |
PRJNA412695 |
| SRA |
SRP119181 |
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