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| Status |
Public on Dec 30, 2021 |
| Title |
Whole genome methylation profiling in HepG2 cells using WGBS (Whole Genome Bisulfite Sequencing) |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
We performed WGBS analysis of HepG2 cells using ENCODE Consortium Data to study CpG methylation and their association with TFBS (transcription factor binding sites).
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| Overall design |
WGBS data was produced by ENCODE Production Lab and submitted to ENCODE Data Coordination Center. We further processed the data to generate whole genome methylation profile using Bismark and Bowtie2 aligner.
An alternative analysis of ENCODE data.
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| |
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| Contributor(s) |
Partridge EC, Chhetri SB, Myers RM, Mendenhall EM |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 26, 2017 |
| Last update date |
Dec 31, 2021 |
| Contact name |
Eric M Mendenhall |
| E-mail(s) |
emendenhall@hudsonalpha.org
|
| Organization name |
HudsonAlpha Institute
|
| Lab |
Mendenhall Lab
|
| Street address |
601 Genome Way Northwest
|
| City |
Huntsville |
| State/province |
AL |
| ZIP/Postal code |
35806 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE104248 |
Towards an integrative map of a single cell type's transcription factor landscape |
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| Relations |
| BioProject |
PRJNA412697 |
