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Series GSE104142 Query DataSets for GSE104142
Status Public on Mar 01, 2019
Title Defining transcription factor networks that govers SCC growth [ChIP_seq_mm10]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq analyses were perform to define the distribution of Pitx1, Sox2, Trp63 and Klf4 through the genome and define their interactions in SCC.
Overall design ChIP-seq sequencing was done on TPC issolated from tumors or cultures cells in un differentiated or differentiated conditions. ChIPs for shPitx1 experimentes were performed 48 hours after Pitx1 depletion in replicates
Contributor(s) Ana S, Markus S
Citation(s) 30713093
Submission date Sep 22, 2017
Last update date Jul 25, 2021
Contact name Markus Schober
Organization name New York University School of Medicine
Department Dermatology
Street address 550 First Ave, Smilow 407
City New York
State/province NY
ZIP/Postal code 10016
Country USA
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (22)
GSM2790566 SCC_1_culture_input
GSM2790567 SCC_1_culture_Pitx1_ChIP
GSM2790568 SCC_1_invivo_input
This SubSeries is part of SuperSeries:
GSE104145 Defining transcription factor networks that govers SCC growth
BioProject PRJNA411823
SRA SRP118688

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104142_Klf4_peaks.bed.gz 243.9 Kb (ftp)(http) BED
GSE104142_Pitx1_peaks.bed.gz 102.9 Kb (ftp)(http) BED
GSE104142_RAW.tar 1.5 Mb (http)(custom) TAR (of BED)
GSE104142_Sox2_peaks.bed.gz 123.4 Kb (ftp)(http) BED
GSE104142_p63_peaks.bed.gz 801.0 Kb (ftp)(http) BED
SRA Run SelectorHelp
Processed data are available on Series record
Processed data provided as supplementary file
Raw data are available in SRA

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