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| Status |
Public on Jun 14, 2019 |
| Title |
AGO CLIP reveals an activated network for acute regulation of brain glutamate homeostasis in ischemic stroke [dataset 3] |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Adult mouse cortical tissues after MCAO or sham surgery were analyzed by small RNAseq at various time points after reperfusion to assess differences in miRNA abundance in I/R injury model of stroke.
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| Overall design |
Mice were anesthetized briefly with 1.5–2% isoflurane. A heat-blunted nylon suture (6/0) was inserted into the right external carotid artery and advanced until it obstructed the MCA together with the ligation of the common carotid artery for 35 min. Regional cerebral blood flow (CBF, bregma coordinates: 2-mm posterior, 5-mm lateral) was continuously recorded by transcranial laser Doppler flowmetry from the induction of ischemia until 30 min after reperfusion. Surgery success was determined by monitoring regional cerebral blood flow (CBF, bregma coordinates: 2-mm posterior, 5-mm lateral) using transcranial laser Doppler flowmetry, and required a residual CBF <15%, followed by >80% recovery within 10 min of reperfusion. Following MCAO, mice were placed in temperature-controlled recovery cages for 3, 6, 12 or 24 hrs to prevent post-surgery hypothermia and sacrificed. Sham animals were similarly anestheized, arteries exposed for surgical time period without filament insertion. Cortical tissues from ipsilateral or contralateral hemispheres of MCAO, or sham animals were dissected for RNA extraction and library construction. Each set of biological replicates represent animals from a distinct day of surgery. Complete protocol detailed in referenced publication.
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| Contributor(s) |
Kobayashi M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Sep 20, 2017 |
| Last update date |
Jun 14, 2019 |
| Contact name |
Mariko Kobayashi |
| E-mail(s) |
mkobayashi@rockefeller.edu
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| Organization name |
Rockefeller University
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| Department |
Molecular Neuro-Oncology
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| Lab |
Robert B. Darnell
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| Street address |
1230 York Avenue
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
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| Platforms (1) |
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| Samples (27)
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| GSM2788064 |
3hr MCAO contralateral miRNAseq, replicate 1 |
| GSM2788065 |
3hr MCAO contralateral miRNAseq, replicate 2 |
| GSM2788066 |
3hr MCAO contralateral miRNAseq, replicate 3 |
| GSM2788067 |
6hr MCAO contralateral miRNAseq, replicate 1 |
| GSM2788068 |
6hr MCAO contralateral miRNAseq, replicate 2 |
| GSM2788069 |
6hr MCAO contralateral miRNAseq, replicate 3 |
| GSM2788070 |
12hr MCAO contralateral miRNAseq, replicate 1 |
| GSM2788071 |
12hr MCAO contralateral miRNAseq, replicate 2 |
| GSM2788072 |
12hr MCAO contralateral miRNAseq, replicate 3 |
| GSM2788073 |
24hr MCAO contralateral miRNAseq, replicate 1 |
| GSM2788074 |
24hr MCAO contralateral miRNAseq, replicate 2 |
| GSM2788075 |
24hr MCAO contralateral miRNAseq, replicate 3 |
| GSM2788076 |
3hr MCAO ipsilateral miRNAseq, replicate 1 |
| GSM2788077 |
3hr MCAO ipsilateral miRNAseq, replicate 2 |
| GSM2788078 |
3hr MCAO ipsilateral miRNAseq, replicate 3 |
| GSM2788079 |
6hr MCAO ipsilateral miRNAseq, replicate 1 |
| GSM2788080 |
6hr MCAO ipsilateral miRNAseq, replicate 2 |
| GSM2788081 |
6hr MCAO ipsilateral miRNAseq, replicate 3 |
| GSM2788082 |
12hr MCAO ipsilateral miRNAseq, replicate 1 |
| GSM2788083 |
12hr MCAO ipsilateral miRNAseq, replicate 2 |
| GSM2788084 |
12hr MCAO ipsilateral miRNAseq, replicate 3 |
| GSM2788085 |
24hr MCAO ipsilateral miRNAseq, replicate 1 |
| GSM2788086 |
24hr MCAO ipsilateral miRNAseq, replicate 2 |
| GSM2788087 |
24hr MCAO ipsilateral miRNAseq, replicate 3 |
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| This SubSeries is part of SuperSeries: |
| GSE104053 |
AGO CLIP reveals an activated network for acute regulation of brain glutamate homeostasis in ischemic stroke |
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| Relations |
| BioProject |
PRJNA408078 |
| SRA |
SRP118293 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE104037_TC-miRNAseq_counts.txt.gz |
59.6 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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