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Series GSE10373 Query DataSets for GSE10373
Status Public on Sep 22, 2008
Title Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Platform organism Oryza sativa
Sample organism Oryza sativa Japonica Group
Experiment type Expression profiling by array
Summary Using rice cultivars Nipponbare, which exhibits resistance to Striga hermonthica (a root parasitic plant that causes devastating loss of yield), and IAC165, which is susceptible, we aim to identify suites of genes underlying susceptibility and resistance to S. hermonthica by profiling changes in gene expression using rice whole genome microarrays. In addition to a functional categorisation of changes in gene expression, genes that were significantly differentially regulated within regions predicted to contain Nipponbare quantitative trait loci for resistance were identified.
Keywords: Infected material vs. comparable control tissue, time course
Overall design Root tissue was harvested from two cultivars of rice that had been infected with Striga hermonthica (or from uninfected control tissue). Three timepoints were used (2, 4 and 11 days after infection or mock-inoculation) using two replicate chips per treatment/timepoint.
Contributor(s) Scholes JD, Swarbrick PJ, Huang K, Slate J, Press MC
Citation(s) 19086183
Submission date Feb 04, 2008
Last update date Dec 27, 2017
Contact name Julie Scholes
Organization name University of Sheffield
Department Animal and Plant Sciences
Street address Western Bank
City Sheffield
ZIP/Postal code S10 2TN
Country United Kingdom
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (24)
GSM261998 IAC165, 2 days after mock-infection, biological replicate #1
GSM261999 IAC165, 2 days after mock-infection, biological replicate #2
GSM262000 IAC165, 2 days after infection with S. hermonthica, biological replicate #1
BioProject PRJNA108111

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10373_RAW.tar 194.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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