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Series GSE103209 Query DataSets for GSE103209
Status Public on Mar 26, 2019
Title Imprinted genes in Three Capsella Species
Organisms Capsella grandiflora; Capsella orientalis
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Summary Genome-wide identification of imprinted genes in Capsella grandiflora and Capsella orientalis
 
Overall design Two replicates of Capsella grandiflora reciprocal hybrid seeds and two replicates of Capsella orientalis hybrid seeds
 
Contributor(s) Hatorangan MR, Steige K, Slotte T, Köhler C
Citation(s) 29808019
Submission date Aug 28, 2017
Last update date May 15, 2019
Contact name Marcelinus Rocky Hatorangan
E-mail(s) marcelinus.r.hatorangan@sinarmas-agri.com
Organization name PT SMART, Tbk.
Department Biotechnology
Lab Genome Editing
Street address Cijayanti, Babakan Madang
City Sentul
State/province Jawa Barat
ZIP/Postal code 16810
Country Indonesia
 
Platforms (4)
GPL16879 Illumina HiSeq 2000 (Capsella grandiflora)
GPL23963 Illumina HiSeq 2500 (Capsella grandiflora)
GPL23964 Illumina HiSeq 2000 (Capsella orientalis)
Samples (23)
GSM2757432 Capsella grandiflora A (Cg A)
GSM2757433 Capsella grandiflora B (Cg B)
GSM2757434 Capsella grandiflora C (Cg C)
Relations
BioProject PRJNA400593
SRA SRP116392

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103209_CgCHHmethcoverage.bw 151.5 Mb (ftp)(http) BW
GSE103209_CgCHHmethpercentage.bw 122.7 Mb (ftp)(http) BW
GSE103209_Cgr1.csv.gz 5.2 Mb (ftp)(http) CSV
GSE103209_Cgr2.csv.gz 4.3 Mb (ftp)(http) CSV
GSE103209_CoCHHmethcoverage.bw 190.4 Mb (ftp)(http) BW
GSE103209_CoCHHmethpercentage.bw 115.4 Mb (ftp)(http) BW
GSE103209_Cor1.csv.gz 987.1 Kb (ftp)(http) CSV
GSE103209_Cor2.csv.gz 856.7 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
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