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| Status |
Public on Mar 08, 2018 |
| Title |
Identification of ZEB2 binding sites in Hepatocellular Carcinoma Cell Line SNU398 |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ZEB2, a member of the ZEB family of EMT inducers, is involved in cellular proliferation, senescence, and invasion in most of the human cancers. However, genes regulated by ZEB2 in hepatocellular carcinoma (HCC) are not identified so far. Hence, we conducted a ChIP-Seq study in high ZEB2 expressing HCC cell line SNU398 by using a homemade anti-ZEB2 antibody (clone 6E5).
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| Overall design |
Chromatin fragments bound by ZEB2 were subject to ChIP using ZEB2 antibody and followed by high-throughput sequencing
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| Web link |
https://doi.org/10.1007/s13402-018-0375-7
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| |
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| Contributor(s) |
Tamer Y, Pelin E, Metin C, Irem Y |
| Citation(s) |
29516288 |
| Submission date |
Aug 24, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Tamer Yagci |
| E-mail(s) |
tyagci@gtu.edu.tr
|
| Phone |
00902626052573
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| Organization name |
Gebze Technical University
|
| Department |
Molecular Biology and Genetics
|
| Lab |
Molecular Oncology
|
| Street address |
Istanbul Street
|
| City |
Kocaeli |
| ZIP/Postal code |
41400 |
| Country |
Turkey |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA400050 |
| SRA |
SRP116108 |
