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Series GSE103048 Query DataSets for GSE103048
Status Public on Mar 08, 2018
Title Identification of ZEB2 binding sites in Hepatocellular Carcinoma Cell Line SNU398
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ZEB2, a member of the ZEB family of EMT inducers, is involved in cellular proliferation, senescence, and invasion in most of the human cancers. However, genes regulated by ZEB2 in hepatocellular carcinoma (HCC) are not identified so far. Hence, we conducted a ChIP-Seq study in high ZEB2 expressing HCC cell line SNU398 by using a homemade anti-ZEB2 antibody (clone 6E5).
 
Overall design Chromatin fragments bound by ZEB2 were subject to ChIP using ZEB2 antibody and followed by high-throughput sequencing
Web link https://doi.org/10.1007/s13402-018-0375-7
 
Contributor(s) Tamer Y, Pelin E, Metin C, Irem Y
Citation(s) 29516288
Submission date Aug 24, 2017
Last update date May 15, 2019
Contact name Tamer Yagci
E-mail(s) tyagci@gtu.edu.tr
Phone 00902626052573
Organization name Gebze Technical University
Department Molecular Biology and Genetics
Lab Molecular Oncology
Street address Istanbul Street
City Kocaeli
ZIP/Postal code 41400
Country Turkey
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (2)
GSM2753034 ZEB2 ChIP-Seq
GSM2753035 input DNA
Relations
BioProject PRJNA400050
SRA SRP116108

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103048_RAW.tar 338.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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