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Series GSE102690 Query DataSets for GSE102690
Status Public on Jul 04, 2018
Title Eed, a member of the Polycomb group, is required for nephron differentiation and the maintenance of nephron progenitor cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We used R26R-tdTomato reporter mice activated by the Six2-TGC transgene to isolate cell populations co-expressing GFP and tdTomato by FACS from kidneys of control P0 mice. We observed two distinct populations of cells from control kidneys based on lower or higher tdTomato expression along with high GFP-expression from the Six2-TGC transgene. RNASeq experiment was conducted to analyze the transcriptome of these populations
 
Overall design Examination of 2 different populations of cells derived from Six2-expressing kidney by RNA-seq.
 
Contributor(s) Ettou S, Jain D, Kreidberg J
Citation(s) 29945864
Submission date Aug 15, 2017
Last update date Mar 21, 2019
Contact name Peter J Park
E-mail(s) peter_park@harvard.edu
Phone 617-432-7373
Organization name Harvard Medical School
Department Center for Biomedical Informatics
Street address 10 Shattuck St
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM3042005 Control_LowExpression_Rep1
GSM3042006 Control_LowExpression_Rep2
GSM3042007 Control_LowExpression_Rep3
Relations
BioProject PRJNA398390
SRA SRP115490

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102690_GSM3042005-GSM3042016_RawFragments_CuffDiff2Batch2.txt.gz 1.8 Mb (ftp)(http) TXT
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Processed data are available on Series record
Raw data are available in SRA

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