|
| Status |
Public on Jul 11, 2018 |
| Title |
Quaking isoform depletion in C2C12 myoblasts; direct binding targets of Quaking RNA binding proteins |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
29021242, 31437148 |
| |
| Submission date |
Aug 14, 2017 |
| Last update date |
Sep 18, 2019 |
| Contact name |
W. Samuel Fagg |
| E-mail(s) |
wsfagg@utmb.edu
|
| Organization name |
University of Texas Medical Branch
|
| Department |
Surgery/Biochemistry and Molecular Biology
|
| Street address |
301 University Blvd, Department of Surgery, MRB5.150, L21875
|
| City |
Galveston |
| State/province |
TX |
| ZIP/Postal code |
77551 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL16417 |
Illumina MiSeq (Mus musculus) |
|
| Samples (20)
|
| GSM2741540 |
C2C12 control replicate 3 |
| GSM2741541 |
C2C12 panQk depletion replicate 1 run1 |
| GSM2741542 |
C2C12 panQk depletion replicate 1 run2 |
| GSM2741543 |
C2C12 Qk5 depletion replicate 1 run1 |
| GSM2741544 |
C2C12 Qk5 depletion replicate 1 run2 |
| GSM2741545 |
C2C12 Qk5 depletion replicate 2 |
| GSM2741546 |
C2C12 Qk5 depletion replicate 3 |
| GSM2741547 |
C2C12 Qk6/7 depletion replicate 1 run1 |
| GSM2741548 |
C2C12 Qk6/7 depletion replicate 1 run2 |
| GSM2741549 |
C2C12 Qk6/7 depletion replicate 2 |
| GSM2741550 |
C2C12 Qk6/7 depletion replicate 3 |
| GSM2741756 |
anti-PanQk iCLIP, 72h differentiated C2C12 myotubes (MiSeq pilot) |
| GSM2741757 |
anti-Qk7 iCLIP, C2C12 myoblasts (MiSeq pilot) |
| GSM2741758 |
anti-HA iCLIP, C2C12 myoblasts (MiSeq + HiSeq) |
| GSM2741759 |
anti-PanQk iCLIP, C2C12 myoblasts (MiSeq + HiSeq) |
| GSM2741760 |
anti-PanQk iCLIP 72h differentiated C2C12 myotubes (MiSeq + HiSeq) |
| GSM2741761 |
anti-Qk6 iCLIP, C2C12 myoblasts (MiSeq) |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE102595 |
Genomewide analysis of Quaking isoform depletion in C2C12 myoblasts |
| GSE102614 |
Determination of direct binding targets of Quaking RNA binding proteins |
|
| Relations |
| BioProject |
PRJNA398220 |
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