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Series GSE102606 Query DataSets for GSE102606
Status Public on Feb 14, 2018
Title Regulation of posterior body and ectodermal morphogenesis in zebrafish by localized Yap1 and Wwtr1
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary The vertebrate embryo undergoes a series of dramatic morphological changes as the body extends to form the complete anterior-posterior axis during the somite-forming stages. The molecular mechanisms regulating these complex processes are still largely unknown. We show that the Hippo pathway transcriptional coactivators Yap1 and Wwtr1 are specifically localized to the ectoderm and notochord, and play a critical and unexpected role in posterior body extension by regulating the assembly of Fibronectin underneath the ectoderm and surrounding the notochord. We also find that Yap1/Wwtr1, also acting through Fibronectin, have an essential role in the ectodermal morphogenesis necessary to form the initial dorsal and ventral fins, a process that had been thought to involve bending of an epithelial sheet, but which we now show involves active cell migration. Our results reveal how the Hippo pathway transcriptional program, localized to two specific tissues, acts to control essential morphological events in the vertebrate embryo.
 
Overall design two biological replicates of tails of yap1/wwtr1 double homozygous mutants and siblings (24 each at 16-18 somite stage) were collected for RNAseq. Tails are tissues of the posterior end until the third newest somite (S-III).
 
Contributor(s) Kimelman D, Smith NL, Lai JK, Stainier DY
Citation(s) 29283341
Submission date Aug 14, 2017
Last update date Jul 25, 2021
Contact name Jason Lai
E-mail(s) jasonlaikh@gmail.com
Organization name Max Planck Institute For Heart and Lung Research
Department Developmental Genetics
Lab Stainier Lab
Street address Ludwigstrasse 43
City Bad Nauheim
State/province Hessen
ZIP/Postal code 61231
Country Germany
 
Platforms (1)
GPL20828 Illumina NextSeq 500 (Danio rerio)
Samples (4)
GSM2741690 siblings_replicate1
GSM2741691 siblings_replicate2
GSM2741692 mutants_replicate1
Relations
BioProject PRJNA398194
SRA SRP115384

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102606_RAW.tar 4.3 Mb (http)(custom) TAR (of FPKM_TRACKING)
GSE102606_tail_siblings_mutants.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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