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Series GSE102063 Query DataSets for GSE102063
Status Public on Apr 12, 2018
Title Whole Retina RNAseq after injury and Cyclopamine(C) treatment in zebrafish
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary several genes are being regulated after injury at various time points and after cyclopamine treatment.
 
Overall design Examination of uninjured, 12hpi, 4dpi and cyclopamine treated 4dpi retinae with paired-end reads.
 
Contributor(s) Kaur S, Mitra S, Ramachandran R
Citation(s) 29719254
Submission date Jul 31, 2017
Last update date May 15, 2019
Contact name Rajesh Ramachandran
E-mail(s) rajeshra@iisermohali.ac.in
Organization name Indian Institute of Science Education and Research, Mohali
Department Department of Biological Sciences
Lab Regeneration Biology Lab
Street address Knowledge city, Sector 81, SAS Nagar, Manauli
City Mohali
State/province Punjab
ZIP/Postal code 140306
Country India
 
Platforms (1)
GPL18413 Illumina HiSeq 2500 (Danio rerio)
Samples (4)
GSM2722659 Uninjured_Zebrafish_Retina_RNA-seq
GSM2722660 12hpi_Zebrafish_Retina_RNA-seq
GSM2722661 4dpi_Zebrafish_Retina_RNA-seq
Relations
BioProject PRJNA396510
SRA SRP114405

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102063_uninjured_12-HPI_DOWN_isoform_exp_filtered.txt.gz 42.3 Kb (ftp)(http) TXT
GSE102063_uninjured_12-HPI_UP_isoform_exp_filtered.txt.gz 73.2 Kb (ftp)(http) TXT
GSE102063_uninjured_4-DPI-C_DOWN_gene_exp_filtered.txt.gz 6.6 Kb (ftp)(http) TXT
GSE102063_uninjured_4-DPI-C_UP_gene_exp_filtered.txt.gz 5.4 Kb (ftp)(http) TXT
GSE102063_uninjured_4-DPI_DOWN_gene_exp_filtered.txt.gz 104.7 Kb (ftp)(http) TXT
GSE102063_uninjured_4-DPI_UP_gene_exp_filtered.txt.gz 178.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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