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Series GSE101672 Query DataSets for GSE101672
Status Public on Jul 21, 2017
Title Identification of GLYMA.06G314400 and GLYMA.13G317000 binding sites in soybean early maturation embryos
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.06G314400 and GLYMA.13G317000 in early maturation embryos using ChIP-seq.
Overall design Identification of GLYMA.06G314400 and GLYMA.13G317000 binding sites in soybean embryos at the early maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates. A total of 6 samples were sequenced using the Illumina HiSeq2500 platform.
Contributor(s) Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ
Citation(s) 31892538
Submission date Jul 20, 2017
Last update date Jul 25, 2021
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (6)
GSM2711818 GmEM_GLYMA.06G314400-ChIP_br1
GSM2711819 GmEM_GLYMA.06G314400-ChIP_br2
GSM2711820 GmEM_GLYMA.13G317000-ChIP_br1
BioProject PRJNA395160
SRA SRP113185

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101672_RAW.tar 5.7 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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