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Series GSE101663 Query DataSets for GSE101663
Status Public on Jul 20, 2017
Title Identification of GLYMA.13G317000 binding sites in soybean mid-maturation embryos
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.13G317000 in mid-maturation embryos using ChIP-seq.
Overall design Identification of Glyma.13G317000 binding sites in soybean embryos at the mid-maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates. A total of 4 samples were sequenced using the Illumina HiSeq2500 platform.
Contributor(s) Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ
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Submission date Jul 19, 2017
Last update date Jul 25, 2021
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (4)
GSM2711717 GmMM_GLYMA.13G317000-ChIP_br1
GSM2711718 GmMM_GLYMA.13G317000-ChIP_br2
GSM2711719 GmMM_GLYMA.13G317000-Input_br1
BioProject PRJNA395102
SRA SRP113030

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Supplementary file Size Download File type/resource
GSE101663_RAW.tar 2.6 Mb (http)(custom) TAR (of NARROWPEAK)
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Raw data are available in SRA
Processed data provided as supplementary file

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