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Series GSE101663 Query DataSets for GSE101663
Status Public on Jul 20, 2017
Title Identification of GLYMA.13G317000 binding sites in soybean mid-maturation embryos
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.13G317000 in mid-maturation embryos using ChIP-seq.
 
Overall design Identification of Glyma.13G317000 binding sites in soybean embryos at the mid-maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates. A total of 4 samples were sequenced using the Illumina HiSeq2500 platform.
 
Contributor(s) Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ
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Submission date Jul 19, 2017
Last update date Jul 25, 2021
Contact name John Harada
E-mail(s) jjharada@ucdavis.edu
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (4)
GSM2711717 GmMM_GLYMA.13G317000-ChIP_br1
GSM2711718 GmMM_GLYMA.13G317000-ChIP_br2
GSM2711719 GmMM_GLYMA.13G317000-Input_br1
Relations
BioProject PRJNA395102
SRA SRP113030

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101663_RAW.tar 2.6 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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