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Series GSE101649 Query DataSets for GSE101649
Status Public on Jul 20, 2017
Title Identification of GLYMA.08G357600 binding sites in soybean early maturation embryos.
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.08G357600 in early maturation embryos using ChIP-seq.
Overall design Identification of Glyma.08G357600 binding sites in soybean embryos at the early maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates. A total of 4 samples were sequenced using the Illumina HiSeq2500 platform.
Contributor(s) Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ
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Submission date Jul 19, 2017
Last update date Jul 25, 2021
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (4)
GSM2711463 GmEM_GLYMA.08G357600-ChIP_br1
GSM2711464 GmEM_GLYMA.08G357600-ChIP_br2
GSM2711465 GmEM_GLYMA.08G357600-Input_br1
BioProject PRJNA395064
SRA SRP112907

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Supplementary file Size Download File type/resource
GSE101649_RAW.tar 720.0 Kb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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