|
| Status |
Public on Jul 20, 2017 |
| Title |
Identification of GLYMA.08G357600 binding sites in soybean mid-maturation embryos. |
| Organism |
Glycine max |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.08G357600 in mid-maturation embryos using ChIP-seq.
|
| |
|
| Overall design |
Identification of Glyma.08G357600 binding sites in soybean embryos at the mid-maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates, with two technical replicates (sequencing lanes) for each sample. A total of 4 samples were sequenced using the Illumina HiSeq2500 platform.
**Please note that the processed data *narrowPeak files have been updated on Jan 19, 2021**
|
| |
|
| Contributor(s) |
Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jul 19, 2017 |
| Last update date |
Jan 19, 2021 |
| Contact name |
John Harada |
| E-mail(s) |
jjharada@ucdavis.edu
|
| Organization name |
University of California
|
| Department |
Plant Biology
|
| Lab |
Harada lab
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19246 |
Illumina HiSeq 2500 (Glycine max) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA395060 |
| SRA |
SRP112906 |
Less...
More...