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Series GSE101648 Query DataSets for GSE101648
Status Public on Jul 20, 2017
Title Identification of GLYMA.08G357600 binding sites in soybean mid-maturation embryos.
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during soybean embryo development, we identified the binding sites genome-wide for transcription factor GLYMA.08G357600 in mid-maturation embryos using ChIP-seq.
Overall design Identification of Glyma.08G357600 binding sites in soybean embryos at the mid-maturation stage. ChIP and total chromatin controls (input) were obtained for two biological replicates, with two technical replicates (sequencing lanes) for each sample. A total of 4 samples were sequenced using the Illumina HiSeq2500 platform.

**Please note that the processed data *narrowPeak files have been updated on Jan 19, 2021**
Contributor(s) Pelletier J, Baden R, Jo L, Chen M, Golberg RB, Harada JJ
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Submission date Jul 19, 2017
Last update date Jan 19, 2021
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL19246 Illumina HiSeq 2500 (Glycine max)
Samples (8)
GSM2711455 GmMM_GLYMA.08G357600-ChIP_br1.1
GSM2711456 GmMM_GLYMA.08G357600-ChIP_br1.2
GSM2711457 GmMM_GLYMA.08G357600-ChIP_br2.1
BioProject PRJNA395060
SRA SRP112906

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101648_MM-GLYMA.08G357600-P2-1_catTR_peaks.narrowPeak.gz 520.6 Kb (ftp)(http) NARROWPEAK
GSE101648_MM-GLYMA.08G357600-P2-2_catTR_peaks.narrowPeak.gz 448.4 Kb (ftp)(http) NARROWPEAK
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Raw data are available in SRA
Processed data are available on Series record

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