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Series GSE101601 Query DataSets for GSE101601
Status Public on Dec 06, 2017
Title A novel addressable 9600-microwell array single cell RNA-seq method applied on fresh mouse cortical cells and frozen human cortical nuclei
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We adopted the STRT-seq [Islam et al., Nat Methods 11, 163-166 (2013)] RNA-seq technology to a 9600-well array and applied it to analyze single cells from mouse and human cortex single cells.
 
Overall design 2192 single cells from mouse somatosensory cortex and 2028 single nuclei from human post-mortem middle temporal gyrus cortex.
 
Contributor(s) Hochgerner H, Srinivasan M, Zeisel A, Linnarsson S, Lein E
Citation(s) 29180631
Submission date Jul 18, 2017
Last update date Mar 19, 2019
Contact name Sten Linnarsson
Organization name Karolinska Institutet
Department Medical Biochemistry and Biophysics
Lab Molecular Neurobiology
Street address Scheeles väg 1
City Stockholm
ZIP/Postal code 171 65
Country Sweden
 
Platforms (2)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (4220)
GSM2706561 WG960011_A02-W01
GSM2706562 WG960011_A02-W09
GSM2706563 WG960011_A02-W12
Relations
BioProject PRJNA394919
SRA SRP112900

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101601_molecules_human.xlsx 163.8 Mb (ftp)(http) XLSX
GSE101601_molecules_mouse.xlsx 159.7 Mb (ftp)(http) XLSX
Raw data are available in SRA
Processed data is available on Series record

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