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Series GSE100220 Query DataSets for GSE100220
Status Public on Sep 09, 2020
Title Cytosine methylation dynamics during spermatogenesis and post-testicular sperm maturation
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary We carried out whole genome bisulfite sequencing in seven purified sperm populations, including primary spermatocytes, early and late round spermatids, and mature sperm isolated from the caput, corpus, and cauda epididiymis, and from the vas deferens.
 
Overall design Testicular sperm populations were isolated by elutriation. Epididymal and vas deferens sperm were obtained by gently squeezing sperm out of the dissected tissue. Sperm were washed several times prior to genomic DNA extraction, and purified gDNA was subject to WGBS.
 
Contributor(s) Rando OJ, Galan C, Serra R, Krueger F
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 20, 2017
Last update date Jul 25, 2021
Contact name Felix Krueger
E-mail(s) fkrueger@altoslabs.com
Organization name Altos Labs
Department Bioinformatics
Street address Granta Park
City Cambridge
ZIP/Postal code CB21 6GP
Country United Kingdom
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (14)
GSM2674819 Caput sperm 1
GSM2674820 Cauda sperm 1
GSM2674821 Corpus sperm 1
Relations
BioProject PRJNA391076
SRA SRP109758

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100220_RAW.tar 2.5 Gb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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