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Platform GPL9833 Query DataSets for GPL9833
Status Public on Jul 29, 2010
Title NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen Systems Inc.
Manufacture protocol http://www.nimblegen.com
Catalog number 05542332001
 
Description Promoter tiling array using NimbleGen platform. Mouse MM8 build. Probe length 50-75bp isothermal. Tiled regions are 8200bp upstream and 3000bp downstream of 5 prime ends of genes as annotated in MM8.
 
Web link http://www.nimblegen.com/products/chip/promoter.html
Submission date Dec 28, 2009
Last update date Jul 29, 2010
Contact name Jorja Henikoff
E-mail(s) jorja@fhcrc.org
Phone 206-667-4850
Organization name Fred Hutchinson Cancer Research Center
Department Basic Sciences
Lab Henikoff
Street address 1100 Fairview AV N, A1-162
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Samples (22) GSM497099, GSM497100, GSM497104, GSM497108, GSM497109, GSM572522 
Series (7)
GSE19884 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis
GSE30689 Enrichment profiles of Ser-5 phosphorylated RNA polymerase II (PolII S5p) in mouse female ES cells
GSE30761 Mammalian X upregulation

Data table header descriptions
ID NimbleGen PROBE_ID, FS=forward strand, RS=reverse strand.
CHR Chromosome
RANGE_START Start position of the probe within chromosome
RANGE_END End position of the probe within chromosome
SEQUENCE DNA sequence synthesized on the array
RANGE_GB

Data table
ID CHR RANGE_START RANGE_END SEQUENCE RANGE_GB
CHR01FS003521489 chr1 3521489 3521488 AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG NC_000067.4
CHR01FS003521569 chr1 3521569 3521568 TGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTAAATCTC NC_000067.4
CHR01FS003521689 chr1 3521689 3521688 GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG NC_000067.4
CHR01FS003521789 chr1 3521789 3521788 GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG NC_000067.4
CHR01FS003521874 chr1 3521874 3521873 TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC NC_000067.4
CHR01FS003521969 chr1 3521969 3521968 AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG NC_000067.4
CHR01FS003522069 chr1 3522069 3522068 CATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCTGGCCC NC_000067.4
CHR01FS003658583 chr1 3658583 3658582 CAGCCAGCAACACAATTGTCTGACAGACTGTGGTCTCCTTTATATGTTCA NC_000067.4
CHR01FS003658683 chr1 3658683 3658682 GACCCAGTGGATACTGTCTCATTGTAGTATTTTTCTCCACGTTTTCCTACTTCT NC_000067.4
CHR01FS003658798 chr1 3658798 3658797 GATTCAAAAGTCTAATAAATGTTACAATTAAAATGACTTCTTCAGTACACTGAGTT NC_000067.4
CHR01FS003658883 chr1 3658883 3658882 ATCTGTAGGAGGCACACACAGGTGTTTAGTGACAATAACTAATAAGCACTTATATTGCTGAT NC_000067.4
CHR01FS003658993 chr1 3658993 3658992 CAAGTTACCAAATAGGTTGATAAGTTTTTGGTACCACACTGCTAGATTAAAAC NC_000067.4
CHR01FS003659103 chr1 3659103 3659102 GTTCTTCCTCATAATTAAAGAATACCCAACTTGGACCTTCCAATACTTTTCTG NC_000067.4
CHR01FS003659198 chr1 3659198 3659197 TCTCCCAGGGTCTGAAATATATATGTTTCCACATCAATTTGTCTAACAGTACACCATGC NC_000067.4
CHR01FS003659283 chr1 3659283 3659282 AATACGTTCTAAGGCAGGAGGTCTAGGGCCATGCTCACCCTGCTTTACAG NC_000067.4
CHR01FS003659383 chr1 3659383 3659382 CAAGGACGCTGACTTCTGCCAGAAAGAGAAGTGTGTGAATCTATGTTACAAAT NC_000067.4
CHR01FS003659528 chr1 3659528 3659527 CAAAAAGCATACAGGTGAAAGTACAGAGTACATGCCAGTATCAGCCCACTT NC_000067.4
CHR01FS003659613 chr1 3659613 3659612 ACTAAATTGCTTTAAAGCCAAGGAGTCTCTAGGGTAACAGCCTCTATATTTTTC NC_000067.4
CHR01FS003659728 chr1 3659728 3659727 AAAAGAACAGATTTCTGAGCATATTGTCCCACCACATTCCTACATCTGTGCAGTAATG NC_000067.4
CHR01FS003659828 chr1 3659828 3659827 ACTTCAGTGTATAAGCAAAGTGACAACTATGTAAAGAGACTTGGTGGATCAAGTGAGAAG NC_000067.4

Total number of rows: 2137504

Table truncated, full table size 223039 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9833_2007-09-21_MM8_Deluxe_Promoter_HX1.ncd.gz 284 b (ftp)(http) NCD
GPL9833_2007-09-21_MM8_Deluxe_Promoter_HX1.ndf.gz 142.3 Mb (ftp)(http) NDF
GPL9833_2007-09-21_MM8_Deluxe_Promoter_HX1.pos.gz 17.6 Mb (ftp)(http) POS

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