NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL9802 Query DataSets for GPL9802
Status Public on Mar 29, 2012
Title Transcriptional responses of mouse BMM and TEPM to lipopolysaccharide (LPS)
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's website (www.agilent.com).
 
Description 60-mer spotted oligonucleotide probes.
 
Contributor(s) Schroder K, Irvine KM, Sweet MJ
Citation(s) 22451944
Submission date Dec 15, 2009
Last update date Mar 29, 2012
Contact name Kate Schroder
E-mail(s) K.Schroder@imb.uq.edu.au
Phone +617 33462087
Fax +617 33462101
Organization name Institute for Molecular Bioscience
Street address University of Queensland, St Lucia
City Brisbane
State/province QLD
ZIP/Postal code 4072
Country Australia
 
Samples (24) GSM485828, GSM485829, GSM485830, GSM485831, GSM485832, GSM485833 
Series (2)
GSE19490 Transcriptional responses of mouse BMM and TEPM to lipopolysaccharide (LPS)
GSE19492 Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

Data table header descriptions
ID
SEQUENCE Probe sequence
Ensembl_gene_id Ensembl gene targeted by probe
Ensembl_transcript_id(s) Ensembl transcript(s) targeted by probe within 2kb of the 3' end of the transcript
Description Ensembl gene description
Gene_symbol Ensembl gene symbol
Human_ensembl_gene(s)_in_orthology_cluster For cross-species comparisons: all human and mouse protein coding genes were clustered into orthology clusters to permit cross-species comparisons. This column details the human gene(s) within this orthology cluster.
Mouse_ensembl_gene(s)_in_orthology_cluster For cross-species comparisons: all human and mouse protein coding genes were clustered into orthology clusters to permit cross-species comparisons. This column details the mouse gene(s) within this orthology cluster.
Orthology_Cluster_type For cross-species comparisons: all human and mouse protein coding genes were clustered into orthology clusters to permit cross-species comparisons. This column details the orthology relationship between the human and mouse genes within the orthology cluster (one-to-one_orthology_versus_one/many-to-many).
SPOT_ID

Data table
ID SEQUENCE Ensembl_gene_id Ensembl_transcript_id(s) Description Gene_symbol Human_ensembl_gene(s)_in_orthology_cluster Mouse_ensembl_gene(s)_in_orthology_cluster Orthology_Cluster_type SPOT_ID
ENSMUSG00000000056-1 TTGTTTGGACTGCTGTTAAGATCTGACTCAGTGTGTGCCTTACCCATTACTGGTCGACAT ENSMUSG00000000056 ENSMUST00000103015 Nuclear prelamin A recognition factor (Iron-only hydrogenase-like protein 2) (IOP2). [Source:Uniprot/SWISSPROT;Acc:Q9CYQ7] Narf ENSG00000141562 ENSMUSG00000000056 one-to-one Ensembl:ENSMUSG00000000056
ENSMUSG00000000056-2 TGAGAGAGTGCAGTCATTTATGTCAGAGAAGACACCTCGCATCTCACTACTCATGAAGCA ENSMUSG00000000056 ENSMUST00000103015 Nuclear prelamin A recognition factor (Iron-only hydrogenase-like protein 2) (IOP2). [Source:Uniprot/SWISSPROT;Acc:Q9CYQ7] Narf ENSG00000141562 ENSMUSG00000000056 one-to-one Ensembl:ENSMUSG00000000056
ENSMUSG00000000056-3 CTGTGGATTCACGGCTCAGCTTGTAAACATTGAGTTGAAATGGAAGATTTATTATGATTT ENSMUSG00000000056 ENSMUST00000103015 Nuclear prelamin A recognition factor (Iron-only hydrogenase-like protein 2) (IOP2). [Source:Uniprot/SWISSPROT;Acc:Q9CYQ7] Narf ENSG00000141562 ENSMUSG00000000056 one-to-one Ensembl:ENSMUSG00000000056
ENSMUSG00000000056-4 ATATTACATATGGGGCTCCCTCCTGCATCTAGAGATGGGAAACTGCCTGAAGAACTTACT ENSMUSG00000000056 ENSMUST00000103015 Nuclear prelamin A recognition factor (Iron-only hydrogenase-like protein 2) (IOP2). [Source:Uniprot/SWISSPROT;Acc:Q9CYQ7] Narf ENSG00000141562 ENSMUSG00000000056 one-to-one Ensembl:ENSMUSG00000000056
ENSMUSG00000000148-1 AAGTACCCACACTTGCCCTCCAGCTTCTCCAAGACCCAGAGAGTTACGTCCGAGCAAGTG ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000064662; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-2 CCCATAATCTTTAAAGAATTCAGATACATTAAAAGTTCAAAGTCACAACTGTGGGTCCTG ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-3 CCGTCACCCAACGTTTGAAAGTCCCATAATCTTTAAAGAATTCAGATACATTAAAAGTTC ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000110806; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-4 TTATTAAAGAGGTGGCTTGTTTTCTGCTCAGAACAGGTAGTACTGATGTCTATAACCTTC ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000110806; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-5 CAAAAGGCCTGTGACCTGCTCCTCTTCTTGAGGGACAAGACAGTTCCCTGCAGTAGCCCT ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000064662; ENSMUST00000110806; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-6 CTGCAGGACATGCTGGCCACGGTGGGTGTGTTGGAGGAGAACGAAGCTGACTGCTACTAA ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000064662; ENSMUST00000110806; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-7 TTCTCGGAGAGCTGTTCCCCATACTACAGAAGCGCCTATGCAGCCCATGTTGGGAGGTGA ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000064662; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000148-8 AACGAAGCTGACTGCTACTAAGGCGTGTCCACGTCCTGTCCCTGTTTCCATCCTGTGCCA ENSMUSG00000000148 ENSMUST00000110807; ENSMUST00000110806; ENSMUST00000100505; ENSMUST00000041588 "EST AA881470 (AA881470), transcript variant 2, mRNA [Source:RefSeq_dna;Acc:NM_181066]" AA881470 ENSG00000106009 ENSMUSG00000000148 one-to-one Ensembl:ENSMUSG00000000148
ENSMUSG00000000149-1 TGAATCGGGGACTGTGAGACTACTGAATCCACACCATCACTCTGCTGTTGATCTGTAAAA ENSMUSG00000000149 ENSMUST00000000153 Guanine nucleotide-binding protein alpha-12 subunit (G alpha-12). [Source:Uniprot/SWISSPROT;Acc:P27600] Gna12 ENSG00000146535 ENSMUSG00000000149 one-to-one Ensembl:ENSMUSG00000000149
ENSMUSG00000000149-2 AATCCACACCATCTAATACCTGGCTCAAGAGTGCTGGACTACCAGCCACACCAGCGAGCT ENSMUSG00000000149 ENSMUST00000000153 Guanine nucleotide-binding protein alpha-12 subunit (G alpha-12). [Source:Uniprot/SWISSPROT;Acc:P27600] Gna12 ENSG00000146535 ENSMUSG00000000149 one-to-one Ensembl:ENSMUSG00000000149
ENSMUSG00000000149-3 TTGGCCTCACACTAGGCTGTAAAGAGCATGCGATGCTGCTAAGCTCACCGTGTCCAAGCC ENSMUSG00000000149 ENSMUST00000000153 Guanine nucleotide-binding protein alpha-12 subunit (G alpha-12). [Source:Uniprot/SWISSPROT;Acc:P27600] Gna12 ENSG00000146535 ENSMUSG00000000149 one-to-one Ensembl:ENSMUSG00000000149
ENSMUSG00000000149-4 TCTACAGAAACTCTTCCTTGTTGACACAGTTAACCAAGGTTCAGGTGTACGCAGACACAC ENSMUSG00000000149 ENSMUST00000000153 Guanine nucleotide-binding protein alpha-12 subunit (G alpha-12). [Source:Uniprot/SWISSPROT;Acc:P27600] Gna12 ENSG00000146535 ENSMUSG00000000149 one-to-one Ensembl:ENSMUSG00000000149
ENSMUSG00000000184-1 TGAACACACTCACGTGTGATGCCCTGACAGAGCTGCTGGCCAAGATCACCCACACTGATG ENSMUSG00000000184 ENSMUST00000000188 G1/S-specific cyclin-D2. [Source:Uniprot/SWISSPROT;Acc:P30280] Ccnd2 ENSG00000118971 ENSMUSG00000000184 one-to-one Ensembl:ENSMUSG00000000184
ENSMUSG00000000184-2 CTGCTAGCCCCTTCTCTCTCTAGTTATGTCTTGTTCTTTGTGTTTTTAGGATGAAACTTC ENSMUSG00000000184 ENSMUST00000000188 G1/S-specific cyclin-D2. [Source:Uniprot/SWISSPROT;Acc:P30280] Ccnd2 ENSG00000118971 ENSMUSG00000000184 one-to-one Ensembl:ENSMUSG00000000184
ENSMUSG00000000184-3 TGGATTGTCTCAAAGCCTGCCAGGAGCAAATCGAAGCTCTGCTGCTGAACAGCCTGCAGC ENSMUSG00000000184 ENSMUST00000000188 G1/S-specific cyclin-D2. [Source:Uniprot/SWISSPROT;Acc:P30280] Ccnd2 ENSG00000118971 ENSMUSG00000000184 one-to-one Ensembl:ENSMUSG00000000184
ENSMUSG00000000184-4 AGTTCCGTCAAGAGCAGCATAACGCCGGATCCAAGTCTGTGGAAGATCCGGACCAAGCCA ENSMUSG00000000184 ENSMUST00000000188 G1/S-specific cyclin-D2. [Source:Uniprot/SWISSPROT;Acc:P30280] Ccnd2 ENSG00000118971 ENSMUSG00000000184 one-to-one Ensembl:ENSMUSG00000000184

Total number of rows: 15208

Table truncated, full table size 4923 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap