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Platform GPL98 Query DataSets for GPL98
Status Public on Mar 11, 2002
Title [Hu35KsubA] Affymetrix Human 35K SubA Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Has 35714 entries and was indexed 29-Jan-2002.

Keywords = high density oligonucleotide array
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=hu35k
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (318) GSM2285, GSM2290, GSM2295, GSM2300, GSM2305, GSM2310 
Series (13)
GSE64 Insulin sensitive muscle sample pool 1
GSE65 Insulin sensitive muscle sample pool 2
GSE66 Insulin sensitive muscle sample pool 3

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
AA000993_at AA000993 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze46h10.r1 Soares retina N2b4HR Homo sapiens cDNA clone 362083 5'. AA000993 PR domain containing 8 PRDM8 56978 NM_001099403 /// NM_020226 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA001296_s_at AA001296 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh82b09.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 427769 5'. AA001296 PHD finger protein 23 PHF23 79142 NM_024297 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA002245_at AA002245 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh85f01.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428089 5'. AA002245 zinc finger CCCH-type containing 11A ZC3H11A 9877 NM_014827 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA004231_at AA004231 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh92a03.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428716 5'. AA004231
AA004333_at AA004333 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh91a01.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428616 5'. AA004333
AA004987_at AA004987 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh94b01.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 428905 5'. AA004987 BMP2 inducible kinase, mRNA (cDNA clone MGC:33000 IMAGE:5272264) BMP2K 55589 NM_017593 /// NM_198892 0006468 // protein amino acid phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
AA005190_at AA005190 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh95d06.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429035 5'. AA005190 Ribonuclease 6 precursor RNASET2 8635 NM_003730 0006401 // RNA catabolic process // traceable author statement 0005576 // extracellular region // traceable author statement /// 0005576 // extracellular region // inferred from electronic annotation 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred from electronic annotation /// 0004540 // ribonuclease activity // traceable author statement /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0033897 // ribonuclease T2 activity // inferred from electronic annotation
AA007264_at AA007264 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh97e06.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429250 5'. AA007264 ubiquitin specific peptidase 39 USP39 10713 NM_006590 0000245 // spliceosome assembly // traceable author statement /// 0006397 // mRNA processing // traceable author statement /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0008380 // RNA splicing // traceable author statement /// 0008380 // RNA splicing // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA007282_at AA007282 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh97b10.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429211 5'. AA007282
AA007583_at AA007583 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zh99d03.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429413 5'. AA007583 CDNA FLJ54919 complete cds, highly similar to G2 and S phase expressed protein 1 GTSE1 51512 NM_016426 0000085 // G2 phase of mitotic cell cycle // non-traceable author statement /// 0006977 // DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest // non-traceable author statement /// 0007017 // microtubule-based process // non-traceable author statement 0005737 // cytoplasm // inferred from electronic annotation /// 0005874 // microtubule // inferred from electronic annotation /// 0005881 // cytoplasmic microtubule // non-traceable author statement
AA009602_at AA009602 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze82e10.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 365514 5'. AA009602
AA009826_at AA009826 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze82b02.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 365451 5'. AA009826 Chromosome 9 open reading frame 21, mRNA (cDNA clone MGC:168115 IMAGE:9020492) C9orf21 195827 NM_153698
AA009913_at AA009913 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze83f05.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 365601 5'. AA009913 DPH2 homolog (S. cerevisiae) DPH2 1802 NM_001039589 /// NM_001384 0005515 // protein binding // inferred from electronic annotation
AA010324_at AA010324 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zi09c03.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 430276 5'. AA010324
AA010686_at AA010686 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze19a12.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359422 5'. AA010686 CCR4-NOT transcription complex, subunit 2 CNOT2 4848 NM_014515 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006358 // regulation of transcription from RNA polymerase II promoter, global // non-traceable author statement /// 0045449 // regulation of transcription // inferred from electronic annotation 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator activity // traceable author statement /// 0030528 // transcription regulator activity // inferred from electronic annotation
AA010750_at AA010750 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze22c01.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359712 5'. AA010750 LAG1 homolog, ceramide synthase 2 LASS2 29956 NM_022075 /// NM_181746 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0030148 // sphingolipid biosynthetic process // inferred from electronic annotation /// 0046513 // ceramide biosynthetic process // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // transcription factor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0050291 // sphingosine N-acyltransferase activity // inferred from electronic annotation
AA010762_at AA010762 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze22d07.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359725 5' similar to gb:L06419 PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE PRECURSOR (HUMAN);. AA010762 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 PLOD3 8985 NM_001084 0006464 // protein modification process // traceable author statement /// 0019538 // protein metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // traceable author statement /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030867 // rough endoplasmic reticulum membrane // inferred from electronic annotation 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008475 // procollagen-lysine 5-dioxygenase activity // traceable author statement /// 0008475 // procollagen-lysine 5-dioxygenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016702 // oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen // inferred from electronic annotation /// 0016706 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors // inferred from electronic annotation /// 0031418 // L-ascorbic acid binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
AA010933_s_at AA010933 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze23a09.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359800 5'. AA010933
AA011243_s_at AA011243 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank ze19d03.r1 Soares fetal heart NbHH19W Homo sapiens cDNA clone 359429 5'. AA011243
AA011452_at AA011452 Homo sapiens Mar 11, 2009 Exemplar sequence GenBank zi01e06.r1 Soares fetal liver spleen 1NFLS S1 Homo sapiens cDNA clone 429538 5' similar to contains Alu repetitive element;. AA011452 exosome component 6 EXOSC6 118460 NM_058219 0006364 // rRNA processing // inferred from electronic annotation /// 0006396 // RNA processing // inferred from electronic annotation 0000178 // exosome (RNase complex) // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0000175 // 3'-5'-exoribonuclease activity // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electronic annotation /// 0004527 // exonuclease activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation

Total number of rows: 8934

Table truncated, full table size 7614 Kbytes.






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