NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL9295 Query DataSets for GPL9295
Status Public on Jul 28, 2010
Title GenAu MB BCELL v3.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol as described in www.nimblegen.com
 
Description genomic regions of potential pax5 target genes from mm6
including IGH
isothermal tiling oligos at 100bp

Native NimbelGen files (ndf, pos) linked below as supplementary files.
 
Contributor(s) McManus S
Submission date Sep 25, 2009
Last update date Jul 28, 2010
Contact name Meinrad Busslinger
E-mail(s) busslinger@imp.ac.at
Phone 00431-79730
Organization name Instutute of Molecular Pathology
Street address Dr. Bohrgasse 7
City Vienna
ZIP/Postal code 1030
Country Austria
 
Samples (3) GSM456492, GSM456493, GSM456494
Series (1)
GSE18278 IGH analysis in pro-B cells with H3K4me3, H3K4me2 and H3K9ac

Data table header descriptions
ID
CHROMOSOME Chromosomal location (NCBI mouse build build 34)
RANGE_GB ACCESSION.VERSION
Position Chromosomal position (NCBI mouse build build 34)
SEQUENCE Sequence of oligo
LENGTH oligo probe length
RANGE_START the start position (relative to the RANGE_GB accession)
RANGE_END the end position (relative to the RANGE_GB accession)

Data table
ID CHROMOSOME RANGE_GB Position SEQUENCE LENGTH RANGE_START RANGE_END
MB3_0119_0227 chr1 NC_000067.2 21447200 CCTTCTTCTGAGGCAGTCTCAGAGTCTGTTCATCTGAAGGAGAAA 45 21447200 21447244
MB3_0490_0500 chr1 NC_000067.2 21447660 AGTTATGCACTGATAGGAAAGCCTACAGTTACACACACACACACTCATAAATGTACAGAACAT 63 21447660 21447722
MB3_0447_0025 chr1 NC_000067.2 21448590 CCAATTGAACAACTACATCATATCTCATCTACATCCCTCACTATTGGGGTACACA 55 21448590 21448644
MB3_0726_0128 chr1 NC_000067.2 21448922 GCGAATTCCTTAACTCCTGGGGCTATCTTATTTTTGTTGCATCTTGGGTAATTGA 55 21448922 21448976
MB3_0278_0348 chr1 NC_000067.2 21449056 TGGGGAAAGGGCTCCATTATAACACATGGTGGTTTATGATCAATTACAAGTGATGTCTT 59 21449056 21449114
MB3_0590_0298 chr1 NC_000067.2 21449156 ATTTAGGGGAGGCAGAAACTACTCCCTGATGAGCTCTGGAAAGTC 45 21449156 21449200
MB3_0267_0127 chr1 NC_000067.2 21449256 AGGATCATGGGCACAGGTGTAAGCTGTGTCTCATTGGTTGAGGGA 45 21449256 21449300
MB3_0224_0114 chr1 NC_000067.2 21449356 ACCAGAGCAGAAGTCTTATTTGGAATCTAAGCAGCTGAGGGCATAG 46 21449356 21449401
MB3_0059_0301 chr1 NC_000067.2 21449483 TGGAGTTATGAGATGGGAGATAGTGTCTGCATGATACAAGAGGTAAAGATTAAACCTC 58 21449483 21449540
MB3_0394_0202 chr1 NC_000067.2 21449611 TCAAAACACTAGATCACACACTCCTTGCTTTTTCTTTAGACTTGCATCCTTACCAATGGA 60 21449611 21449670
MB3_0688_0768 chr1 NC_000067.2 21449842 TTTTCATTATTTTTAATTGTGTGTGTGTGTGGGGGGGGTGTACACATCATTGTGAGTG 58 21449842 21449899
MB3_0363_0079 chr1 NC_000067.2 21449942 TCTTTCCAGCTTTTCCAGCTATGTAAAGTCTCCCCCCTCCCCCCT 45 21449942 21449986
MB3_0268_0984 chr1 NC_000067.2 21450092 GCCCCTTACTAGGAAATGGACTGTTGAAGTTAAGTGTCTCAGTCCAT 47 21450092 21450138
MB3_0418_0190 chr1 NC_000067.2 21450312 TATGGTTTTCAAGTTGCTGTGAAAATGCCTTTATATAGCCTTACATCATCATCATGTTCAGGGCA 65 21450312 21450376
MB3_0104_0998 chr1 NC_000067.2 21450431 ACTTTCTTTTCTCCAGCCTTTAGTAAGATCATGCCTATTGGTTAACTCCACCCAA 55 21450431 21450485
MB3_0637_0337 chr1 NC_000067.2 21450532 TAATGTTTGACATTCTAATGCATGGTATTTGGGTTTCAGTTACAGCTTTCTTCCTGGCCA 60 21450532 21450591
MB3_0710_0502 chr1 NC_000067.2 21450632 GCCTGCTGGTCTAGTTGCAGGCTTAAGGTAAGAGCCCTTCTGATC 45 21450632 21450676
MB3_0278_1018 chr1 NC_000067.2 21451197 TATTATGATAAGTATTAGCATAGCAGACTTAAGCCACCATAGACTCAGTCTTTGGTGTGACAATG 65 21451197 21451261
MB3_0396_0950 chr1 NC_000067.2 21451323 AAGAGTTAAGTTCTCCTTCAGTTGGCTTATCCACTGGTAGCAGTAAATTCATCTAGG 57 21451323 21451379
MB3_0627_0883 chr1 NC_000067.2 21452371 AATGTTTCTAATTCCTCCTGGAAGCTGTTCTTGTGTGTTGAAAGACACAAACATCTCC 58 21452371 21452428

Total number of rows: 82489

Table truncated, full table size 9270 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9295_MB3.ndf.gz 3.9 Mb (ftp)(http) NDF
GPL9295_MB3.pos.gz 498.8 Kb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap