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Platform GPL9209 Query DataSets for GPL9209
Status Public on Sep 18, 2009
Title [TTHB8401a520105F] Riken Thermus thermophilus HB8 4K mRNA custom array, library Rev.2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Thermus thermophilus HB8
Manufacturer Affymetrix
Manufacture protocol Affymetrix custom array standard protocol. Please see http://www.affymetrix.com for more information.
 
 
Contributor(s) Agari Y, Shinkai A, Kuramitsu S
Submission date Sep 17, 2009
Last update date Apr 02, 2010
Contact name Yoshihiro Agari
E-mail y_agari@spring8.or.jp
URL http://www.srg.harima.riken.jp/
Organization name RIKEN Harima Institute
Department RIKEN SPring-8 Center
Lab SR System Biology Research Group
Street address 1-1-1, Kouto, Sayo
City Hyogo
ZIP/Postal code 679-5148
Country Japan
 
Samples (415) GSM486516, GSM486517, GSM486518, GSM486519, GSM486520, GSM486521 
Series (52)
GSE19508 Differential expression analysis of T. thermophilus HB8 wild-type strain in response to copper.
GSE19509 Differential expression analysis of T. thermophilus HB8 csoR deficient strain in response to copper.
GSE19521 SuperSeries for the analysis of transcriptional regulation by Thermus themophilus CsoR (TTHA1719)

Data table header descriptions
ID
GeneChip Array name of the GeneChip custom express array
ORGANISM source of genes
Probe_Pairs number of probepairs in each probeset
ORF locus tag
Description annotation of each ORF product
GeneID database ID for the NCBI Entrez Gene
Version identifier of the genome version on GenBank
Chromosome Chromosome ID on GenBank
Strand direction of a ORF
Start_position the locus on the chromosome of the 1st base of ORF
Stop_position the locus on the genome of the last base of each ORF (exclude stop codon)
Sequence DNA sequence of each ORF

Data table
ID GeneChip Array ORGANISM Probe_Pairs ORF Description GeneID Version Chromosome Strand Start_position Stop_position Sequence
AFFX-BioB-3_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-BioB-5_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-BioB-M_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-BioC-3_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-BioC-5_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-BioDn-3_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-BioDn-5_at TTHB8401a520105F E. coli 20 "E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds." J04423.1
AFFX-CreX-3_at TTHB8401a520105F Bacteriophage P1 20 Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. X03453.1
AFFX-CreX-5_at TTHB8401a520105F Bacteriophage P1 20 Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. X03453.1
AFFX-DapX-3_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's." L38424.1
AFFX-DapX-5_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's." L38424.1
AFFX-DapX-M_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's." L38424.1
AFFX-LysX-3_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20)." X17013.1
AFFX-LysX-5_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20)." X17013.1
AFFX-LysX-M_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20)." X17013.1
AFFX-PheX-3_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds." M24537.1
AFFX-PheX-5_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds." M24537.1
AFFX-PheX-M_at TTHB8401a520105F B. subtilis 20 "B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds." M24537.1
AFFX-r2-Bs-dap-3_at TTHB8401a520105F B. subtilis 11 "B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's." L38424.1
AFFX-r2-Bs-dap-5_at TTHB8401a520105F B. subtilis 11 "B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's." L38424.1

Total number of rows: 3492

Table truncated, full table size 2408 Kbytes.




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Supplementary file Size Download File type/resource
GPL9209_TTHB8401a520105F.cdf.gz 3.0 Mb (ftp)(http) CDF
GPL9209_TTHB8401a520105F.psi.gz 18.4 Kb (ftp)(http) PSI

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