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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 02, 2009 |
| Title |
FSU NimbleGen Mouse 385K Whole Genome Tiling |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
NimbleGen
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| Description |
Build: MM8, NCBI 36
native array description file: 2006-07-26_MM8_WG_CGH.ndf
native array description file: 2006-07-26_MM8_WG_CGH.pos
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| Submission date |
Sep 04, 2009 |
| Last update date |
Nov 02, 2009 |
| Contact name |
Ichiro Hiratani |
| Organization name |
Florida State University
|
| Department |
Biological Science
|
| Lab |
David M Gilbert
|
| Street address |
319 Stadium Dr
|
| City |
Tallahassee |
| State/province |
FL |
| ZIP/Postal code |
32306 |
| Country |
USA |
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| Samples (26)
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GSM450272, GSM450273, GSM450274, GSM450275, GSM450276, GSM450277
GSM450278, GSM450279, GSM450280, GSM450281, GSM450282, GSM450283, GSM450284, GSM450285, GSM450286, GSM450287, GSM450288, GSM450289, GSM450290, GSM450291, GSM450292, GSM450293, GSM451992, GSM451993, GSM451994, GSM451995
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| Series (6)
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| GSE17983 |
Replication Timing Reveal An Epigenetic Commitment To Differentiation Prior To Germ Layer Specification (WG_CGH, RT) |
| GSE18019 |
Genome-Wide Dynamics of Replication Timing Revealed by In Vitro Models of Mouse Embryogenesis |
| GSE18079 |
G9a selectively represses a class of late-replicating genes at the nuclear periphery (WG_CGH) |
| GSE18082 |
G9a selectively represses a class of late-replicating genes at the nuclear periphery |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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| Data table header descriptions |
| ID |
|
| CHR |
Chromosomal location of oligo (MM8, NCBI 36) |
| RANGE_GB |
NCBI accession.version |
| RANGE_START |
Chromosomal start position of oligo (MM8, NCBI 36) |
| RANGE_END |
Chromosomal end position of oligo (MM8, NCBI 36) |
| SEQUENCE |
sequence |
| Data table |
| ID |
CHR |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
| CHR01FS003001832 |
chr1 |
NC_000067.4 |
3001832 |
3001885 |
TTCTGCTTGAGCTGACTCTCTAGACAGCTATGTGGATATTTCAACTCTGTAAGA |
| CHR01FS003018759 |
chr1 |
NC_000067.4 |
3018759 |
3018808 |
GATGCTGGAATGTTACAACAATATCAGGGTAAGGGTTTTGGTTCCACCCA |
| CHR01FS003036253 |
chr1 |
NC_000067.4 |
3036253 |
3036304 |
ATCAAAAGATTGACCTTCCATTGTAGGGCCAAGTAACCTTATGCTAAGGCCT |
| CHR01FS003041992 |
chr1 |
NC_000067.4 |
3041992 |
3042041 |
TATCAAAGCAAGTCTGTTTTAGTAGGAGCGGCAGTGACCTCCTGGTTTTT |
| CHR01FS003053606 |
chr1 |
NC_000067.4 |
3053606 |
3053655 |
AGCCCAATGATCTAGACTCTTAAGCATTGTCTCCAACATGTGGCAGACTT |
| CHR01FS003065156 |
chr1 |
NC_000067.4 |
3065156 |
3065205 |
TGCACGTGGGACGGCTCAGGATGTTGGTATGATGAATTACTAACTCAAGA |
| CHR01FS003076536 |
chr1 |
NC_000067.4 |
3076536 |
3076598 |
TAATCAAATAGACATTGTACCAGAATTTCCAGCTACATGGGTTGTTCTATGCTCACCATCAGA |
| CHR01FS003087994 |
chr1 |
NC_000067.4 |
3087994 |
3088051 |
TCAATGCAAGGAGTACCCATATTGTATCATACATTCATTGAAGGGAGGTTTCGGTCAT |
| CHR01FS003093673 |
chr1 |
NC_000067.4 |
3093673 |
3093722 |
GAGAATGAGACGGGTTCGTGAGACTACAGTCAAGCACAAGACAATATATG |
| CHR01FS003105423 |
chr1 |
NC_000067.4 |
3105423 |
3105472 |
AGTGAAGCAATTGGCGATAAGGGTCATGCTGGGACCTCTTGCAGTTAATT |
| CHR01FS003110919 |
chr1 |
NC_000067.4 |
3110919 |
3110968 |
ACCAGGACACCTTTTCCATACAACTTACCAGTGCAGGCTTATTGCCTAGT |
| CHR01FS003116559 |
chr1 |
NC_000067.4 |
3116559 |
3116608 |
TTTCATCTAGGGTCCTGCACTTTGAGTCCTATGAGTCCCTCACCTCCTAG |
| CHR01FS003122452 |
chr1 |
NC_000067.4 |
3122452 |
3122504 |
GAGTGTTCTCCACGTTGTACAACTCCAATCAAACTCTTTGATATGGGCCTTAA |
| CHR01FS003134224 |
chr1 |
NC_000067.4 |
3134224 |
3134273 |
TATAGAACGCCTATCTGTTCCTCCACCAGGAAAAGGCGCTGATCCAAAAT |
| CHR01FS003156928 |
chr1 |
NC_000067.4 |
3156928 |
3156984 |
TGAACTCAAGAACTGCTACTGATAGTTAAGACACTTAGACAGTGAAAAGGCTGGGAT |
| CHR01FS003162762 |
chr1 |
NC_000067.4 |
3162762 |
3162816 |
CAGGAACTATACAAGGTGGCCCACTCTTTCCATACCTTTTCGAAATAATAATTGA |
| CHR01FS003174487 |
chr1 |
NC_000067.4 |
3174487 |
3174549 |
GAGCAGCAATAAACGTGGATGTATAGGTATCTCTGTGATAGGCTATAGAATCTTTATAGTAAG |
| CHR01FS003180251 |
chr1 |
NC_000067.4 |
3180251 |
3180305 |
GCAGTGTTTCCACTAAAATTCCCTCTACTAGTTTCAAGGTTTTTGAGGTCATTGA |
| CHR01FS003185980 |
chr1 |
NC_000067.4 |
3185980 |
3186031 |
ACTCTACCAAGTGGTGTAGGTTCTTAGACGCAAGAAATCTCAGGTAGAGTTT |
| CHR01FS003191525 |
chr1 |
NC_000067.4 |
3191525 |
3191580 |
GGCCTAAATGAACTGTTGGACATCAGGTTCATGAAAACGGTTTTGTGAAGGTAATA |
Total number of rows: 384849
Table truncated, full table size 40315 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9156_2006-07-26_MM8_WG_CGH.ndf.gz |
20.6 Mb |
(ftp)(http) |
NDF |
| GPL9156_2006-07-26_MM8_WG_CGH.pos.gz |
3.0 Mb |
(ftp)(http) |
POS |
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