NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL8756 Query DataSets for GPL8756
Status Public on Dec 31, 2009
Title Arizona_Rice_45K_array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Oryza sativa
Manufacturer Galbraith Lab (http://ag.arizona.edu/~dgalbrai/)
Manufacture protocol The rice oligonucleotide microarrays are printed on aminosilane-coated “Superamine” slides (Telechem) or “Powermatrix” slides (Full Moon Biosystems), using Telechem Type SMP3 printing pins. Complete protocol description could be found at: http://ag.arizona.edu/microarray/methods.html
 
 
Contributor(s) Galbraith DW
Submission date Jun 23, 2009
Last update date Dec 31, 2009
Contact name Fernando Andres
E-mail(s) andres@mpipz.mpg.de
Organization name Max Planck Institute for Plant Breeding Research
Department Plant Developmental Biology
Lab Prof George Coupland
Street address Carl von Linne 10
City Cologne
ZIP/Postal code 50829
Country Germany
 
Samples (20) GSM421727, GSM425834, GSM425835, GSM425836, GSM854136, GSM854137 
Series (3)
GSE16796 Analysis of PHOTOPERIOD SENSITIVITY5 Sheds Light on the Role of Phytochromes in Photoperiodic Flowering in Rice
GSE34724 Enhanced salt stress tolerance of rice plants expressing a vacuolar H+-ATPase subunit c1 (SaVHAc1) gene from the halophyte grass Spartina alterniflora Löisel
GSE89109 Global tanscriptome analysis in Oryza sativa identifies genes regulated by copper in the medium

Data table header descriptions
ID TIGR Rice Oligo ID
GB_LIST GenBank accession
LocusID TIGR Rice Genome Annotation release 5 model locus identifier (http://rice.plantbiology.msu.edu/index.shtml)
Feat_Name
SEQUENCE Oligonucleotide sequence
SPOT_ID

Data table
ID GB_LIST LocusID Feat_Name SEQUENCE SPOT_ID
TR030001 LOC_Os01g01030.1 12001.m06750 AGGCATACACACGCTTGACTTGATTTGGCTTGAAGTCGAGCTAGCAGGTTGCTCATTAGCCGTTGTGT TIGR:TR030001
TR030002 LOC_Os01g01040.1;LOC_Os01g01040.2;LOC_Os01g01040.3 12001.m06751;12001.m42815;12001.m150453 ACGCGGGAGTTATTGACATCGAAAGAGTTGGGGAAATGCAGGAGTCGAGTAGTTCTAGACAGGCT TIGR:TR030002
TR030003 LOC_Os01g01050.1;LOC_Os01g01050.2 12001.m06752;12001.m42816 GGACAGCAGTGGCAAAACCTAGGCATGTTCCTGCTGTTGCTCAACGGATGATCGCGCATGCAC TIGR:TR030003
TR030004 LOC_Os01g01070.1;LOC_Os01g01070.2 12001.m42818;12001.m06754 AGGACCTCCAACTTTTGTCCAGGTCAAATCAAGTTGCTATTGTCACCGTCGATGGTAGACCAGGCCC TIGR:TR030004
TR030005 LOC_Os01g01080.1;LOC_Os01g01080.2;LOC_Os01g01080.3 12001.m06755;12001.m42819;12001.m150454 TGGCACGTCCACAAAAAGTACTCTGCGGACCGAGTTGCCAACTGTTGGGCTTTCCAACCA TIGR:TR030005
TR030006 LOC_Os01g01090.1 12001.m06756 ATCTTCCGTGAAGACACCAAAATCCACTCGTCCCCGACAAGGAATCATCA TIGR:TR030006
TR030007 CCTGTGGAGACTACTGGCATCAATGCGATGTGAAATCGGGGGACTCCAAGGGGAGTGCG TIGR:TR030007
TR030008 LOC_Os01g01130.1 12001.m06760 CGTGCTCGTGCTTTTGCTGACAGCCACTCGAAAGCTTTGTTCCAGTACGCTGCTAGGCATGCTCCTCT TIGR:TR030008
TR030009 LOC_Os01g01140.1 12001.m06761 CCTCAGCCGCGATAGAGCCGAAGAAGATGTCGCATGCTCCTATAGTTGATGCCCACATCGAAGACACCC TIGR:TR030009
TR030010 LOC_Os01g01150.1;LOC_Os01g01150.2;LOC_Os01g01150.3 12001.m06762;12001.m42820;12001.m150455 AGCCCACTTCTTACGGTGGATCATATTAAGCAGCTATTTGGATACTGTGGCAAAGTGGTTGATTGCACCA TIGR:TR030010
TR030011 LOC_Os01g01160.1 12001.m06763 AGGAGCATGACGAAGGATTCAGAGGAGAACCTCTCCTGGGGAGCTCGGAT TIGR:TR030011
TR030012 LOC_Os01g01170.1 12001.m06764 GGCACACCCTTAACAGTGGAAGAAACCTCCAGTTCCGTTTCTGTTGTGCACATTGAGCCAATGTCAAGCA TIGR:TR030012
TR030013 LOC_Os01g01180.1 12001.m06765 ATGGGGTCTGGTGATTGGGGTCCAGTGCTGATCGCGTTGGTCTTGTTCGTGCT TIGR:TR030013
TR030014 LOC_Os01g01190.1 12001.m06766 CGGGCCAAACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCA TIGR:TR030014
TR030015 LOC_Os01g01280.1 12001.m06774 AGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAGCCGCAGC TIGR:TR030015
TR030016 LOC_Os01g01290.1 12001.m06775 AGCAAGAAACGACGGTGTTTTGCACAGCGGGATTGTGTTGCATGAAGACCAT TIGR:TR030016
TR030017 LOC_Os01g01302.1 12001.m06776 ATGTGGCATCTCAACTGGGCTACAGTAGCATCGACTCAGTGACCCTAGAGGACATGGTCCT TIGR:TR030017
TR030018 LOC_Os01g01312.1 12001.m06777 TGTCCACGGCGTATCGATGTGCTGTTGTCCTACGTGACCTGGTCATGCCGTACCT TIGR:TR030018
TR030019 LOC_Os01g01330.1 12001.m06779 CCCGCACGCTCTCAAATGGCGGGATGGGGAACGGTGTAAGGGCTCGACCGGTCTCCGACT TIGR:TR030019
TR030020 LOC_Os01g01340.1;LOC_Os01g01340.2 12001.m06780;12001.m42821 AACGTGCAGATGTACCCAGAGGCCAAGCTCTCATCATCGGCTGCTGTTGC TIGR:TR030020

Total number of rows: 43311

Table truncated, full table size 5119 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap