 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 10, 2009 |
| Title |
NimbleGen C. elegans 72K Expression Array 080128_worm170_modENCODE_expr |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Caenorhabditis elegans |
| Manufacturer |
Roche NimbleGen |
| Manufacture protocol |
Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
|
| |
|
| Description |
NimbleGen 4 plex expression array. Array contains three probes per gene and is based on WS170.
***A different version of this platform with the ORF or SEQ_ID in the ID column is assigned accession number GPL18855 and GPL18856, respectively.
|
| |
|
| Web link |
http://www.nimblegen.com/products/exp/index.html
|
| Contributor(s) |
Lieb JD, Iniguez L |
| Submission date |
Jun 05, 2009 |
| Last update date |
Jun 24, 2014 |
| Contact name |
Jason D Lieb |
| E-mail(s) |
jlieb@bio.unc.edu
|
| Phone |
919-843-3228
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Biology
|
| Lab |
Jason Lieb
|
| Street address |
408 Fordham Hall, CB# 3280
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-3280 |
| Country |
USA |
| |
|
| Samples (26)
|
GSM417006, GSM417007, GSM417008, GSM417009, GSM417010, GSM417011
GSM417012, GSM417013, GSM417014, GSM537723, GSM537724, GSM537725, GSM537726, GSM537727, GSM537730, GSM590206, GSM590207, GSM590208, GSM590209, GSM590210, GSM590211, GSM590212, GSM645263, GSM645264, GSM645265, GSM645266
|
| Series (5)
|
| GSE16621 |
Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans |
| GSE20136 |
Genome-wide nucleosome occupancy profiling by high throughput sequencing, and microarray analysis of RNA abundance |
| GSE21526 |
Comparison of gene expression differences between Caenorhabditis elegans grown in liquid culture versus on plates |
| GSE25933 |
Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2 |
| GSE26201 |
Lieb SDQ4051_LEM2_N2_MXEMB |
|
| Data table header descriptions |
| ID |
|
| PROBE_DESIGN_ID |
Nimblegen design identifier for each probe |
| SEQ_ID |
sequence identifier is the gene name |
| SEQUENCE |
DNA sequence synthesized on the microarray |
| PROBE_CLASS |
experimental or other control (empty) |
| ORF |
|
| SPOT_ID |
|
| Data table |
| ID |
PROBE_DESIGN_ID |
SEQ_ID |
SEQUENCE |
PROBE_CLASS |
ORF |
SPOT_ID |
| 2L52_1P00168 |
7047_0271_0221 |
2L52_1 |
GGAGGAAGTCGTTTGTCAGTGGGATTGCTGCGAAATGGGTGCCAGTCGTGGAAATCTTCA |
experimental |
2L52.1 |
|
| 2L52_1P00420 |
7047_0235_0073 |
2L52_1 |
CATCGAACCTACTCAAGCTAATAGAGTATGGACAATTGTGAACGGAGAGGTTCAATGGAA |
experimental |
2L52.1 |
|
| 2L52_1P01174 |
7047_0144_0192 |
2L52_1 |
GAGGTTGAAGATTCATTAGTTAATAAGTTTCATTCAAAACGTCCATCAAGAGCATGTCGA |
experimental |
2L52.1 |
|
| 2RSSE_1P00534 |
7047_0124_0220 |
2RSSE_1 |
TTCGGTGGCACCATCGCTTTTTCACACTTGTATACACGATGGACGGACGGCGCGAGTAGA |
experimental |
2RSSE.1 |
|
| 2RSSE_1P00667 |
7047_0009_0047 |
2RSSE_1 |
TTCCCACGCGAGTGCTACGAGTATTACGCCAGATACACGGGTCGCACGTTGCGAATCGAC |
experimental |
2RSSE.1 |
|
| 2RSSE_1P00891 |
7047_0069_0387 |
2RSSE_1 |
TGGCAACGGCGTCGGGCGTGCCGGGAGTCTGAAGCAGCACGCGTTGACCCAGACGACGGA |
experimental |
2RSSE.1 |
|
| 2RSSE_2P00053 |
7047_0188_0180 |
2RSSE_2 |
CCAGTCGAGCAACTACGAAGCCTATGCCTACTATGGCTAGGCTTAACAATCGGTTGAGCA |
experimental |
2RSSE.2 |
|
| 2RSSE_2P00170 |
7047_0155_0123 |
2RSSE_2 |
TCGACATAATCCGCCCGCTCACTGCCTGCGGAGGCGACCGATCTCTCTCCTACCTCCAGT |
experimental |
2RSSE.2 |
|
| 2RSSE_2P00519 |
7047_0279_0349 |
2RSSE_2 |
TGACTATCAGGAAGTGGGCGCCTCGAATCCACGTCTCCGAGGTCACACGTCGGTGGAGGA |
experimental |
2RSSE.2 |
|
| 3R5_1P00138 |
7047_0167_0387 |
3R5_1 |
GCTGAGAGTGTGGAGGGCTCAAAAATTCGGACCAGAAAGCATCAAAGAGAGACGAGAAAG |
experimental |
3R5.1 |
|
| 3R5_1P00301 |
7047_0219_0067 |
3R5_1 |
GAGATCAATGTTTACGACGAGCATCGAGCTGATTTAGTGAGTCTAAATTCCGGTAATTTC |
experimental |
3R5.1 |
|
| 3R5_1P00585 |
7047_0079_0345 |
3R5_1 |
TGTTCCTGAAGAGCCTCAATTGAACATCCACAAGGACCCTTTGCCGAGTGATCTTCCACA |
experimental |
3R5.1 |
|
| 4R79_1aP00041 |
7047_0273_0281 |
4R79_1a |
CAACTGTTGTCAGATCTCAACCATCGGCAGATGTGTTTCGAAGCTTTGCCGGATACATTC |
experimental |
4R79.1a |
|
| 4R79_1aP00095 |
7047_0130_0190 |
4R79_1a |
ACATTCCTGAAGATCACAGGGTGACACATCATGAATGGCAAAATTCAGGGAAGTTTCAAG |
experimental |
4R79.1a |
|
| 4R79_1aP00160 |
7047_0147_0353 |
4R79_1a |
ATTGATGGAGTCGATCCTAACCTTCTCAAGCTCCCAGAAGGTCCAGTGCTTTTCAATGCA |
experimental |
4R79.1a |
|
| 4R79_1bP00024 |
7047_0092_0144 |
4R79_1b |
CGAACACTCGAGAGCTGATCGCGATGATCACATTAAGATCAACTGGGATAATATTCTGCC |
experimental |
4R79.1b |
|
| 4R79_1bP00221 |
7047_0286_0122 |
4R79_1b |
AAAATGGATTCACACAGGTTATTGGGACCGCTATGGACTTGTCACCTCTGGATATTGTGA |
experimental |
4R79.1b |
|
| 4R79_1bP00406 |
7047_0238_0290 |
4R79_1b |
TGTGTCGATCATTTTGCGGATTGCCCGCACTTTGCACAATACTGTACCCGTGCTTCATTT |
experimental |
4R79.1b |
|
| 4R79_2P00061 |
7047_0155_0365 |
4R79_2 |
CGAAAATTATTCCGCTTATGTGACACTAAGCACATTGGACTAATTGGGCAGTCAGATCTT |
experimental |
4R79.2 |
|
| 4R79_2P00190 |
7047_0116_0272 |
4R79_2 |
GTGAACGAGCAAGCATTTTGTCGCATTCTGAAAGCTATCGTCAATCAGTCACTCCAACAA |
experimental |
4R79.2 |
|
Total number of rows: 72014
Table truncated, full table size 8641 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL8673.ndf.gz |
4.3 Mb |
(ftp)(http) |
NDF |
|
|
|
|
 |
Less...
More...