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Platform GPL83 Query DataSets for GPL83
Status Public on Mar 11, 2002
Title [MG_U74Cv2] Affymetrix Murine Genome U74 Version 2 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The MG-U74 set includes 3 arrays with a total of 36899 entries and was indexed 29-Jan-2002.
The set represents ~36,000 full length genes and EST clusters derived from sequence clusters in Build 74 of the Mouse Unigene Database.

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 21, 2012: annotation table updated with netaffx build 32
June 24, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=mgu74
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jul 01, 2016
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (612) GSM1217, GSM1220, GSM1223, GSM1226, GSM1228, GSM1231 
Series (65)
GSE479 Alveolar septation
GSE482 Vascular remodeling following pulmonary hypertension
GSE483 Allergic response to ragweed in lung

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
128520_at AW123343 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW123343:UI-M-BH2.1-apf-d-05-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.1-apf-d-05-0-UI /clone_end=3' /gb=AW123343 /gi=6098873 /ug=Mm.758 /len=420 AW123343 coiled-coil domain containing 97 Ccdc97 52132 NM_028771 /// XM_006540173 /// XM_006540174
128523_at AA789631 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA789631:vw62a10.r1 Mus musculus cDNA, 5' end /clone=IMAGE-1248378 /clone_end=5' /gb=AA789631 /gi=2849751 /ug=Mm.7653 /len=282 AA789631 RIKEN cDNA A730063M14 gene A730063M14Rik 100504703 NR_040660 /// XR_380327
128529_at AI639617 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI639617:vv50d01.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1225825 /clone_end=3' /gb=AI639617 /gi=4702726 /ug=Mm.77729 /len=269 AI639617 DDB1 and CUL4 associated factor 17 Dcaf17 75763 NM_001165980 /// NM_001165981 /// NM_001165982 /// NM_198005 /// XM_006500338 /// XM_006500339 /// XM_006500340 /// XM_006500341 /// XR_374534 /// XR_374535 0016567 // protein ubiquitination // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0080008 // Cul4-RING E3 ubiquitin ligase complex // not recorded
128550_at AW124041 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW124041:UI-M-BH2.1-apn-d-07-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.1-apn-d-07-0-UI /clone_end=3' /gb=AW124041 /gi=6099571 /ug=Mm.78819 /len=426 AW124041 collagen, type XXIII, alpha 1 Col23a1 237759 NM_153393 /// XM_006533209 /// XM_006533210 0070207 // protein homotrimerization // not recorded 0005576 // extracellular region // traceable author statement /// 0005581 // collagen trimer // inferred from electronic annotation /// 0005615 // extracellular space // not recorded /// 0005886 // plasma membrane // inferred from electronic annotation /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0008201 // heparin binding // not recorded /// 0042803 // protein homodimerization activity // not recorded
128554_at AI429098 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI429098:ml49g09.x1 Mus musculus cDNA, 3' end /clone=IMAGE-515392 /clone_end=3' /gb=AI429098 /gi=4275024 /ug=Mm.78996 /len=475 AI429098 maestro heat-like repeat family member 4 Mroh4 69439 NM_001177437 /// XM_006521352 /// XM_006521353 /// XM_006521354 /// XM_006521355 /// XM_006521356 /// XM_006521357 /// XM_006521358 0005794 // Golgi apparatus // inferred from direct assay
128577_s_at AI429729 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI429729:mf89b04.x1 Mus musculus cDNA, 3' end /clone=IMAGE-421423 /clone_end=3' /gb=AI429729 /gi=4275655 /ug=Mm.80516 /len=455 AI429729 cerebellin 2 precursor protein Cbln2 12405 NM_172633 /// XM_006526447 /// XM_006526448 /// XM_006526449 /// XM_006526450 /// XM_006526451 0051965 // positive regulation of synapse assembly // inferred from direct assay 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred from direct assay 0005515 // protein binding // inferred from physical interaction
128578_r_at AI846776 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI846776:UI-M-AO1-ael-f-05-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-AO1-ael-f-05-0-UI /clone_end=3' /gb=AI846776 /gi=5490682 /ug=Mm.80560 /len=385 AI846776 GID complex subunit 8 homolog (S. cerevisiae) Gid8 76425 NM_001289651 /// NM_001289652 /// NM_029607 /// XM_006500731 /// XM_006500732 0005634 // nucleus // not recorded /// 0030054 // cell junction // not recorded
128579_r_at AA266818 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA266818:mz91a01.r1 Mus musculus cDNA, 5' end /clone=IMAGE-720744 /clone_end=5' /gb=AA266818 /gi=1903573 /ug=Mm.80563 /len=295 AA266818
128580_at AI595088 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI595088:vb81h04.y1 Mus musculus cDNA, 5' end /clone=IMAGE-763447 /clone_end=5' /gb=AI595088 /gi=4604136 /ug=Mm.80564 /len=278 AI595088 armadillo repeat containing 9 Armc9 78795 NM_027456 /// NM_030184 /// XM_006529952 /// XM_006529953 /// XM_006529954 /// XM_006529955 /// XM_006529956 /// XM_006529957 /// XM_006529958 /// XM_006529959 /// XM_006529960 /// XR_387199 /// XR_387200 /// XR_387201 /// XR_387202 0070062 // extracellular vesicular exosome // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation
128582_at AI648720 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI648720:uk28a12.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1970302 /clone_end=3' /gb=AI648720 /gi=4729554 /ug=Mm.80675 /len=374 AI648720 immunoglobulin superfamily, member 5 Igsf5 72058 NM_001177886 /// NM_001177887 /// NM_028078 /// XM_006523092 /// XM_006523093 /// XM_006523094 /// XM_006523095 /// XM_006523096 0016337 // single organismal cell-cell adhesion // inferred from direct assay 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from direct assay /// 0009986 // cell surface // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0030165 // PDZ domain binding // inferred from direct assay
128583_at AI226912 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI226912:uj11b07.y1 Mus musculus cDNA, 5' end /clone=IMAGE-1907701 /clone_end=5' /gb=AI226912 /gi=3809965 /ug=Mm.80691 /len=562 AI226912 ATP-binding cassette, sub-family G (WHITE), member 2 Abcg2 26357 NM_011920 /// XM_006506148 /// XM_006506149 /// XM_006506150 /// XM_006506151 0006200 // ATP catabolic process // inferred from electronic annotation /// 0006810 // transport // inferred from electronic annotation /// 0006855 // drug transmembrane transport // not recorded /// 0008152 // metabolic process // inferred from electronic annotation /// 0010039 // response to iron ion // inferred from electronic annotation /// 0015893 // drug transport // not recorded /// 0042908 // xenobiotic transport // /// 0046415 // urate metabolic process // not recorded /// 0046618 // drug export // not recorded /// 0051384 // response to glucocorticoid // inferred from electronic annotation /// 0051593 // response to folic acid // inferred from electronic annotation /// 0060136 // embryonic process involved in female pregnancy // not recorded 0005634 // nucleus // not recorded /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // not recorded /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // not recorded /// 0031966 // mitochondrial membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008559 // xenobiotic-transporting ATPase activity // /// 0015238 // drug transmembrane transporter activity // not recorded /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0042803 // protein homodimerization activity // not recorded /// 0046983 // protein dimerization activity // not recorded
128590_at AW121649 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW121649:UI-M-BH2.3-aoc-b-07-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.3-aoc-b-07-0-UI /clone_end=3' /gb=AW121649 /gi=6096982 /ug=Mm.82558 /len=523 AW121649 ankyrin repeat and IBR domain containing 1 Ankib1 70797 NM_001003909 /// NM_001289527 /// NM_001289528 /// NM_001289529 /// XM_006503602 /// XM_006503603 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
128624_at AV228037 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AV228037:AV228037 Mus musculus cDNA, 3' end /clone=4432412G09 /clone_end=3' /gb=AV228037 /gi=6180556 /ug=Mm.85439 /len=296 AV228037 denticleless homolog (Drosophila) Dtl 76843 NM_029766 /// XM_006497212 0000209 // protein polyubiquitination // not recorded /// 0006260 // DNA replication // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // not recorded /// 0006513 // protein monoubiquitination // not recorded /// 0006974 // cellular response to DNA damage stimulus // not recorded /// 0009411 // response to UV // not recorded /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0019985 // translesion synthesis // not recorded /// 0031572 // G2 DNA damage checkpoint // not recorded /// 0051726 // regulation of cell cycle // not recorded 0005634 // nucleus // not recorded /// 0005694 // chromosome // inferred from electronic annotation /// 0005737 // cytoplasm // not recorded /// 0005813 // centrosome // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031464 // Cul4A-RING E3 ubiquitin ligase complex // not recorded /// 0031465 // Cul4B-RING E3 ubiquitin ligase complex // not recorded /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0043231 // intracellular membrane-bounded organelle // not recorded 0004842 // ubiquitin-protein transferase activity // not recorded
128643_r_at AA879843 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA879843:vv99e12.r1 Mus musculus cDNA, 5' end /clone=IMAGE-1230574 /clone_end=5' /gb=AA879843 /gi=2988826 /ug=Mm.86575 /len=412 AA879843 predicted gene 15417 Gm15417 545539 NR_040403 /// NR_040404
128644_at AI644303 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI644303:vw06d02.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1243011 /clone_end=3' /gb=AI644303 /gi=4722778 /ug=Mm.86575 /len=359 AI644303
128645_at AW125499 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW125499:UI-M-BH2.2-aqm-d-12-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.2-aqm-d-12-0-UI /clone_end=3' /gb=AW125499 /gi=6101029 /ug=Mm.86579 /len=384 AW125499 cadherin 11 pseudogene 2610005L07Rik 381598 NM_001024708 /// NM_001033456 /// NR_028428 0007156 // homophilic cell adhesion // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation
128646_at AI843833 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI843833:UI-M-AN1-afc-h-09-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-AN1-afc-h-09-0-UI /clone_end=3' /gb=AI843833 /gi=5478046 /ug=Mm.86601 /len=492 AI843833 solute carrier family 35, member E2 Slc35e2 320541 NM_177186 /// XM_006538952 /// XM_006538953 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
128647_at AI462391 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI462391:ub72f11.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1383309 /clone_end=3' /gb=AI462391 /gi=4316421 /ug=Mm.86727 /len=475 AI462391 RIKEN cDNA 1600014C10 gene 1600014C10Rik 72244 NM_001085385 /// NM_028166 0005739 // mitochondrion // not recorded /// 0005783 // endoplasmic reticulum // not recorded /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from electronic annotation
128651_at AA755094 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA755094:vu02d10.r1 Mus musculus cDNA, 5' end /clone=IMAGE-1179475 /clone_end=5' /gb=AA755094 /gi=2802292 /ug=Mm.86773 /len=320 AA755094 vacuolar protein sorting 18 (yeast) Vps18 228545 NM_172269 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0007032 // endosome organization // inferred from direct assay /// 0007032 // endosome organization // not recorded /// 0007040 // lysosome organization // not recorded /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0046718 // viral entry into host cell // inferred from mutant phenotype 0005764 // lysosome // inferred from electronic annotation /// 0005765 // lysosomal membrane // not recorded /// 0005768 // endosome // inferred from electronic annotation /// 0005769 // early endosome // inferred from direct assay /// 0005884 // actin filament // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0030897 // HOPS complex // not recorded /// 0031902 // late endosome membrane // inferred from electronic annotation 0003779 // actin binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation
128652_at AI643003 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI643003:vw89c05.y1 Mus musculus cDNA, 5' end /clone=IMAGE-1262120 /clone_end=5' /gb=AI643003 /gi=4721478 /ug=Mm.86800 /len=262 AI643003

Total number of rows: 11934

Table truncated, full table size 11892 Kbytes.






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Supplementary data files not provided

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