NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL7743 Query DataSets for GPL7743
Status Public on Dec 10, 2008
Title 2007-05-17_C_elegans_ChIP_01
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer Nimblegen Systems Inc
Manufacture protocol Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number 2007-05-17_C_elegans_ChIP_01
Support glass
Coating aminosilane
 
Description Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
 
Web link http://www.nimblegen.com/products/chip/index.html
Contributor(s) Strome S, Lieb J
Submission date Dec 05, 2008
Last update date Dec 10, 2008
Contact name Everett Zhou
E-mail(s) xlzhou@email.unc.edu
Organization name UNC
Street address 1000 Manning Dr.
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Samples (7) GSM403977, GSM403980, GSM403983, GSM417016, GSM562592, GSM562595 
Series (4)
GSE16133 Strome SGF3165_FLAG_MES4FLAG_EEMB
GSE16621 Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans
GSE22700 Strome NA_MES4FLAG_EEMB

Data table header descriptions
ID
CHROMOSOME Chromosome name or "random" for random control probes
RANGE_GB
SPOT_ID
RANGE_START Start coordinate. wormbase ws170/ UCSC ce4
RANGE_END Stop coordinate. wormbase ws170/ UCSC ce4
RANGE_STRAND Positive or negative
PROBE_CLASS Experimental or control
SEQUENCE Probe sequence
GENOME RELEASE The genome release coordinates correspond to.

Data table
ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START RANGE_END RANGE_STRAND PROBE_CLASS SEQUENCE GENOME RELEASE
IIFS009086006 II NC_003280.6 9086006 9086055 + experimental TGATTTTTTTCTTAATTTAAAATCTAGAGTATTTAGCACTCCTGTTTTTA ws170/ce4
IIFS004300248 II NC_003280.6 4300248 4300297 + experimental AAAATGGTGAAAGTCGTGGAAATTATCGAGGCAAAGAAGGACGCGACGCC ws170/ce4
IIFS009052518 II NC_003280.6 9052518 9052567 + experimental ACATCAGGAACTGCCGTTGCCTCACTCGTTGATTGAACCCAGAGATCGAT ws170/ce4
IFS002289372 I NC_003279.5 2289372 2289421 + experimental TTTGTTGGAAAATTTGCCAAAAAATCGGTTTTCTCAGTTAATTTTCACAG ws170/ce4
IFS006234990 I NC_003279.5 6234990 6235039 + experimental AGCTACAGAACCAGTTCAAACCACCGAAGCTGTTGAAGAAACTACAGAAG ws170/ce4
IFS006485714 I NC_003279.5 6485714 6485763 + experimental CATATGAGGTATTTTTAGTACTCTTTTGTGTCCTTTTACCCCATCTTTTC ws170/ce4
IFS007153998 I NC_003279.5 7153998 7154047 + experimental CATTTTTGGTGGAAATGGTTCTTGTCCAAAAGCTGAAATTGAGTCAACAA ws170/ce4
IFS014191833 I NC_003279.5 14191833 14191882 + experimental TCACATGTTTTTTTTACAATTTTTGCATGTATAAATCCAAAAATTTATAA ws170/ce4
IFS003892666 I NC_003279.5 3892666 3892715 + experimental GGAGATTTGAAGAATATTGGATGTTTCTATAGAGATATAAAAGGTTAGTT ws170/ce4
IFS009501146 I NC_003279.5 9501146 9501195 + experimental ATCTTTCTCTTCTGGTTTTTTTTCTCGCTTTCCTTCATTCCGCTACAAAT ws170/ce4
IFS003583587 I NC_003279.5 3583587 3583636 + experimental TTTAACCCACTGCTCAGGCTTCACTTCCATCACAACACGTGTTTCCTTCT ws170/ce4
IFS012187324 I NC_003279.5 12187324 12187373 + experimental GTAGTTTCTGAGAAGGATTATACGAAACAGTGCAGTCCGAAAATGGCGCC ws170/ce4
IFS008964532 I NC_003279.5 8964532 8964581 + experimental AACCAAAAAAAAAACACCATATTTTAATTACATTTTGTTTTTCAGTGATG ws170/ce4
IFS008517248 I NC_003279.5 8517248 8517297 + experimental TTTTTCTTTAAATCAACATGCGAAGATGGTTCCGCTCAATATCAATGGAC ws170/ce4
IIFS012630713 II NC_003280.6 12630713 12630762 + experimental AAACCTTTTTTTACACAAAAATAGTCAAATTTCGAAAATGTAATAGCGAA ws170/ce4
IIFS000607793 II NC_003280.6 607793 607842 + experimental TGAAAAGTGTTAACAATTAAAAGAAAACCATCAAAATGAAAATAGGAAAA ws170/ce4
IFS007693883 I NC_003279.5 7693883 7693932 + experimental TTCTTAGTCTTTTCCTTCCTCAAGTCAATAAATGTGCATATTTTCCATAT ws170/ce4
IIIFS001087586 III NC_003281.7 1087586 1087635 + experimental TTTAAACTTCCGTGGCAAATGTGCTCTATCGGTGATTTTGAGGTGAAGAT ws170/ce4
IIIFS003033350 III NC_003281.7 3033350 3033399 + experimental TGTAAATGTGTTTGTGTAAATGTGTTTAAAAATGTGTAAAATGTGGACGC ws170/ce4
IFS003624100 I NC_003279.5 3624100 3624149 + experimental TGAACGTAGCTAATATCCTGCTCTAAAGGTAGAAAGGGAAGTCTGTAGGA ws170/ce4

Total number of rows: 657691

Table truncated, full table size 78170 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7743_2007_05_17_C_elegans_ChIP_01.ndf.gz 31.5 Mb (ftp)(http) NDF
GPL7743_2007_05_17_C_elegans_ChIP_01.pos.gz 5.0 Mb (ftp)(http) POS

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap