GEO help: Mouse over screen elements for information.
Status
Public on Aug 26, 2008
Title
Human Promoter ChIP-on-chip Microarray - custom annotation
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
Agilent
Manufacture protocol
The Human Promoter ChIP-on-chip Microarray Set is specifically designed for location analysis of human DNA-binding proteins by pairing chromatin immunoprecipitation (ChIP) with Agilent DNA microarrays. Each microarray contains optimized and validated probes specifically designed for ChIP-on-chip. Coupled with Agilent's probe selection and stringent design processes, the set delivers robust hybridization and reliable binding data with greater true binding events and fewer false positives.
Support
glass
Web link
http://www.chem.agilent.com/Scripts/PDS.asp?lPage=50877 Contributor(s)
Ferrari R , Pellegrini M , Horwitz G , Xie W , Berk A , Kurdistani S Submission date
Jul 08, 2008
Last update date
Oct 24, 2011
Contact name
Siavash K Kurdistani
E-mail(s)
Skurdistani@mednet.ucla.edu Organization name
UCLA
Department
Biological Chemistry
Lab
Kurdistani
Street address
615 Charles E Young Dr South
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Samples (26)
GSM304354 , GSM304355 , GSM304356 , GSM304357 , GSM304358 , GSM304359
GSM304360 ,
GSM304361 ,
GSM304362 ,
GSM304363 ,
GSM304364 ,
GSM304365 ,
GSM304366 ,
GSM304367 ,
GSM304368 ,
GSM304369 ,
GSM304370 ,
GSM304371 ,
GSM304372 ,
GSM304373 ,
GSM304374 ,
GSM304375 ,
GSM304376 ,
GSM304377 ,
GSM304378 ,
GSM762829 Series (6)
GSE12045 Expression profiles and ChIP on chip genomewide experiments with dl1500 virus (expressing WT small e1a).
GSE12046 Expression profiles and ChIP on chip genomewide experiments with R2G mutant virus
GSE12047 Expression profiles and ChIP on chip genomewide experiments with deltaCR2 mutant virus
GSE12543 Profiles and ChIP on chip experiments with dl1500 virus (expressing WT small e1a), R2G and deltaCR2 mutant viruses
GSE30736 Genome-wide binding map of the HIV Tat protein to the human genome (ChIP-chip)
GSE30739 Genome-wide binding map of the HIV Tat protein to the human genome
Data table header descriptions ID GB_ACC RefSeq accession number;
POS Position in the promoter region. Each segment corresponds to 500 bp, starting from -5.5 Kb (pro1) to +2.5Kb (pro16)
Data table ID GB_ACC POS 1
NM_000014 POS1: segment -5.5 Kb to -5 Kb in promoter region of NM_000014
2
NM_000014 POS2: segment -5 Kb to -4.5 Kb in promoter region of NM_000014
3
NM_000014 POS3: segment -4.5 Kb to -4 Kb in promoter region of NM_000014
4
NM_000014 POS4: segment -4 Kb to -3.5 Kb in promoter region of NM_000014
5
NM_000014 POS5: segment -3.5 Kb to -3 Kb in promoter region of NM_000014
6
NM_000014 POS6: segment -3 Kb to -2.5 Kb in promoter region of NM_000014
7
NM_000014 POS7: segment -2.5 Kb to -2 Kb in promoter region of NM_000014
8
NM_000014 POS8: segment -2 Kb to -1.5 Kb in promoter region of NM_000014
9
NM_000014 POS9: segment -1.5 Kb to -1 Kb in promoter region of NM_000014
10
NM_000014 POS10: segment -1 Kb to -0.5 Kb in promoter region of NM_000014
11
NM_000014 POS11: segment -0.5 Kb to 0 Kb in promoter region of NM_000014
12
NM_000014 POS12: segment 0 Kb to 0.5 Kb in promoter region of NM_000014
13
NM_000014 POS13: segment 0.5 Kb to 1 Kb in promoter region of NM_000014
14
NM_000014 POS14: segment 1 Kb to 1.5 Kb in promoter region of NM_000014
15
NM_000014 POS15: segment 1.5 Kb to 2 Kb in promoter region of NM_000014
16
NM_000014 POS16: segment 2 Kb to 2.5 Kb in promoter region of NM_000014
17
NM_000015 POS1: segment -5.5 Kb to -5 Kb in promoter region of NM_000015
18
NM_000015 POS2: segment -5 Kb to -4.5 Kb in promoter region of NM_000015
19
NM_000015 POS3: segment -4.5 Kb to -4 Kb in promoter region of NM_000015
20
NM_000015 POS4: segment -4 Kb to -3.5 Kb in promoter region of NM_000015
220672 17115 Kbytes .Supplementary file Size Download File type/resource GPL7032_probe_locations.txt.gz
8.8 Mb
(ftp) (http) TXT
Less...
More...