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Status
Public on May 23, 2008
Title
Henikoff_Dmel_r52_ChIP tiling design
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Drosophila melanogaster Manufacturer
NimbleGen Systems Inc.
Manufacture protocol
http://www.nimblegen.com/products/chip/index.html
Description
Tiling array using NimbleGen platform (DesignID=6473/6474/6475). FlyBase release 5.2. Complete tiling of Dmel FBr5 pseudo-chromosomes; no filtering; isothermal (target tm=76); mean probe length=53 (range=50 to 75); mean distance between probes=12; every other probe reversed.
Web link
http://www.nimblegen.com Contributor(s)
Henikoff S Submission date
May 21, 2008
Last update date
May 29, 2013
Contact name
Jorja Henikoff
E-mail(s)
jorja@fhcrc.org Phone
206-667-4850
Organization name
Fred Hutchinson Cancer Research Center
Department
Basic Sciences
Lab
Henikoff
Street address
1100 Fairview AV N, A1-162
City
Seattle
State/province
WA
ZIP/Postal code
98109-1024
Country
USA
Samples (129)
GSM333832 , GSM333833 , GSM333834 , GSM333835 , GSM333836 , GSM333837
GSM333838 ,
GSM333839 ,
GSM333840 ,
GSM333841 ,
GSM333842 ,
GSM333843 ,
GSM333844 ,
GSM333845 ,
GSM333846 ,
GSM333847 ,
GSM333848 ,
GSM333849 ,
GSM333850 ,
GSM333851 ,
GSM333852 ,
GSM333853 ,
GSM333854 ,
GSM333855 ,
GSM333856 ,
GSM333858 ,
GSM333859 ,
GSM333860 ,
GSM333861 ,
GSM333863 ,
GSM333864 ,
GSM333866 ,
GSM333867 ,
GSM333868 ,
GSM333869 ,
GSM333870 ,
GSM333871 ,
GSM387593 ,
GSM387594 ,
GSM387595 ,
GSM387596 ,
GSM387597 ,
GSM387598 ,
GSM387600 ,
GSM391380 ,
GSM391381 ,
GSM494304 ,
GSM494305 ,
GSM494306 ,
GSM494307 ,
GSM494308 ,
GSM494309 ,
GSM494310 ,
GSM494311 ,
GSM494312 ,
GSM494313 ,
GSM494314 ,
GSM494315 ,
GSM513658 ,
GSM513659 ,
GSM513660 ,
GSM513661 ,
GSM513662 ,
GSM513663 ,
GSM513664 ,
GSM513666 ,
GSM513667 ,
GSM513668 ,
GSM513669 ,
GSM513671 ,
GSM513673 ,
GSM535513 ,
GSM535514 ,
GSM550119 ,
GSM550120 ,
GSM594180 ,
GSM594181 ,
GSM594182 ,
GSM594183 ,
GSM594184 ,
GSM594185 ,
GSM624859 ,
GSM624860 ,
GSM624861 ,
GSM624862 ,
GSM624863 ,
GSM624864 ,
GSM624865 ,
GSM624866 ,
GSM624867 ,
GSM624868 ,
GSM624869 ,
GSM624870 ,
GSM624871 ,
GSM624872 ,
GSM624873 ,
GSM624874 ,
GSM624875 ,
GSM624876 ,
GSM624877 ,
GSM624878 ,
GSM624879 ,
GSM624880 ,
GSM624881 ,
GSM624882 ,
GSM624883 ,
GSM624884 ,
GSM624885 ,
GSM624886 ,
GSM624887 ,
GSM624888 ,
GSM624889 ,
GSM624890 ,
GSM624891 ,
GSM624892 ,
GSM624895 ,
GSM624896 ,
GSM624897 ,
GSM853698 ,
GSM853699 ,
GSM1447464 ,
GSM1447465 ,
GSM1447466 ,
GSM1447467 ,
GSM1447468 ,
GSM1447469 ,
GSM1447470 ,
GSM1447471 ,
GSM1447472 Series (26)
GSE13217 Genome-wide profiling of salt fractions maps physical properties of chromatin
GSE19788 CATCH-IT method for measuring nucleosome turnover
GSE20471 Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation: ChIP-chip data
GSE20472 Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation
GSE21416 Baculovirus-encoded protein expression for epigenomic profiling in Drosophila cells
GSE25375 Fly_embryos_1-3_hr_150_mM_Salt_Extracted_Chromatin
GSE25376 Fly_embryos_1-3_hr_600_mM_Salt_Extracted_Chromatin
GSE25377 Fly_embryos_1-3_hr_600_mM_Salt_Extracted_Chromatin_Pellet
GSE25378 Fly_embryos_4-6_hr_150_mM_Salt_Extracted_Chromatin
GSE25379 Fly_embryos_4-6_hr_600_mM_Salt_Extracted_Chromatin
GSE25380 Fly_embryos_4-6_hr_600_mM_Salt_Extracted_Chromatin_Pellet
GSE25381 Fly wing disc 80 mM Salt Extracted Chromatin
GSE25382 Fly wing disc 150 mM Salt Extracted Chromatin
GSE25383 Fly wing disc 600 mM Salt Extracted Chromatin
GSE25384 Fly wing disc 600 mM Salt Extracted Chromatin Pellet
GSE25385 Kc_600_mM_Salt_Extracted_Chromatin
GSE25386 Kc 600 mM Salt Extracted Chromatin Pellet
GSE25387 Kc_RNA_Expression_Tiling_Array
GSE25388 Kc H2Av Knockdown 600 mM Salt Extracted Chromatin
GSE25389 Kc H2Av Knockdown 600 mM Salt Extracted Chromatin Pellet
GSE25390 Kc H2Av Knockdown RNA Expression Tiling Array
GSE25392 S2_RNA_expression_Tiling_Array
GSE34719 Differential Expression in UpSET mutant ovaries
GSE34720 UpSET Recruits HDAC Complexes and Restricts Chromatin Accessibility and Acetylation at Promoter Regions
GSE59852 Wash regulates lamin-dependent nuclear genome organization [Chromatin Accessibility]
GSE59854 Wash regulates lamin-dependent nuclear genome organization
Data table header descriptions ID NimbleGen PROBE_ID, FS=forward strand, RS=reverse strand.
CHR Chromosome
STRAND Direction of probe, +=forward strand, -=reverse strand.
START Start position of the probe within chromosome
END End position of the probe within chromosome
SEQUENCE DNA sequence synthesized on the array
GB_RANGE Accession.version[start..stop]
Data table ID CHR STRAND START END SEQUENCE GB_RANGE CHR2LRS000000001
2L
-
1
53
AAAATGAGAGGCAATCTAAATATCTGTTCTGCTTCCTCTGTCGTGCATTGTCG
NT_033779.4[1..53]
CHR2LFS000000065
2L
+
65
127
TATAGGGAGAAATATGATCGCGTATGCGAGAGTAGTGCCAACATATTGTGCTCTTTGATTTTT
NT_033779.4[65..127]
CHR2LRS000000129
2L
-
129
179
GCAACTTGAATATATTATCATCTCGTTCATCCGCCACCATTTTGGGTTGCC
NT_033779.4[129..179]
CHR2LFS000000193
2L
+
193
258
TAAATTCATTGCAACGTTAAATACAGCACAATATATGATCGCGTATGCGAGAGTAGTGCCAACATA
NT_033779.4[193..258]
CHR2LRS000000257
2L
-
257
316
TGTCTTTTTGGGTTTGCGGTAATATAAGACAGAGAACGAGAGGCACTCATTAGCACAATA
NT_033779.4[257..316]
CHR2LFS000000321
2L
+
321
374
ACGACAGAGAGAGAGAGCAGCGGAGATATTTAGATTGCCTATTAAATATGATCG
NT_033779.4[321..374]
CHR2LRS000000385
2L
-
385
447
CGGTAAAATAAGACAGAATGAGAGGCAGTCATTATATAGAGAGCACAATATGTTGGCACTACT
NT_033779.4[385..447]
CHR2LFS000000449
2L
+
449
501
AAACCCAAATCGACAATGCACGACAGAGGAAGCAGAACAGATATTTAGATTGC
NT_033779.4[449..501]
CHR2LRS000000513
2L
-
513
569
AATATGTTGGCACTACTCTCGCATACGCGATCATATTTCTCCCTATAATATGGGAGA
NT_033779.4[513..569]
CHR2LFS000000577
2L
+
577
634
TTGATTTTTTGGCAACCCAAAATGGTGGCGGATGAACGAGATGATAATATATTCAAGT
NT_033779.4[577..634]
CHR2LRS000000641
2L
-
641
705
TACTCTCGCATACGCGATCATATATTGTGCTGTATTTAACGTTGCAATGAATTTATTTCTGATTA
NT_033779.4[641..705]
CHR2LFS000000705
2L
+
705
757
AGTGCCAACATATTGTGCTAATGAGTGCCTCTCGTTCTCTGTCTTATATTACC
NT_033779.4[705..757]
CHR2LRS000000769
2L
-
769
831
GATCATATTTAATAGGCAATCTAAATATCTCCGCTGCTCTCTCTCTCTGTCGTGTATTGTCTT
NT_033779.4[769..831]
CHR2LFS000000833
2L
+
833
883
CGTATGCGAGAGTAGTGCCAACATATTGTGCTCTCTATATAATGACTGCCT
NT_033779.4[833..883]
CHR2LRS000000897
2L
-
897
953
TAAATATCTGTTCTGCTTCCTCTGTCGTGCATTGTCGATTTGGGTTTGCGGTAAAAT
NT_033779.4[897..953]
CHR2LFS000000961
2L
+
961
1017
TCTCATTTTCTCTCCCATATTATAGGGAGAAATATGATCGCGTATGCGAGAGTAGTG
NT_033779.4[961..1017]
CHR2LRS000001025
2L
-
1025
1083
TATTATCATCTCGTTCATCCGCCACCATTTTGGGTTGCCAAAAAATCAAAGAGCACAAT
NT_033779.4[1025..1083]
CHR2LFS000001089
2L
+
1089
1150
AAGTTGCCGCTAATCAGAAATAAATTCATTGCAACGTTAAATACAGCACAATATATGATCGC
NT_033779.4[1089..1150]
CHR2LRS000001153
2L
-
1153
1202
AGAGAACGAGAGGCACTCATTAGCACAATATGTTGGCACTACTCTCGCAT
NT_033779.4[1153..1202]
CHR2LFS000001217
2L
+
1217
1268
CAAACCCAAAAAGACAATACACGACAGAGAGAGAGAGCAGCGGAGATATTTA
NT_033779.4[1217..1268]
2130022 258050 Kbytes .Supplementary file Size Download File type/resource GPL6888.gff.gz
26.0 Mb
(ftp) (http) GFF
GPL6888_Dmel_r52_ChIP.ndf.gz
101.0 Mb
(ftp) (http) NDF
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