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Platform GPL6134 Query DataSets for GPL6134
Status Public on Dec 31, 2007
Title GeneChip Human Tiling 1.0R Array set (4) - NCBI build 36
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol Oligonucleotide probes are synthesized in situ complementary to each corresponding sequences. 35 base pair resolution array.
Catalog number 900774
 
Description For data analysis of the associated Samples, we calculated MAT scores based on the hyridization intensity data of the probes within 500bp windows. The coordinate column in the Platform data table represents the chromosome coordinates for the 500bp window center positions.

The supplementary files (linked below) also report the 500bp window start and end positions (and also sequence of 500bp unit region for used for analysis).
 
Contributor(s) Wendt KS, Yoshida K, Itoh T, Bando M, Koch B, Schirghuber E, Aburatani H, Shirahige K, Peters J
Submission date Nov 14, 2007
Last update date Mar 10, 2008
Contact name Katsuhiko Shirahige
E-mail(s) kshirahi@iam.u-tokyo.ac.jp
Phone +81-3-5842-0756
Fax +81-3-5842-0757
URL http://www.iam.u-tokyo.ac.jp/chromosomeinformatics/
Organization name The University of Tokyo
Department Research Center for Epigenetic Disease
Lab Laboratory of Genome Structure and Function
Street address 1-1-1 Yayoi
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-0032
Country Japan
 
Samples (2) GSM243193, GSM243237
Series (1)
GSE9613 Cohesin mediates transcriptional insulation by CCCTC-binding factor

Data table header descriptions
ID
chr chromosome number
RANGE_GB
coordinate chromosome coordinate (on '-' strand) representing center position of 500bp MAT analysis window
SEQUENCE
RANGE_START
RANGE_END

Data table
ID chr RANGE_GB coordinate SEQUENCE RANGE_START RANGE_END
3_129895 3 NC_000003.10 129895 CACAATGGTGGGCCTCATCCAATCAGTTGAAGGCCTGAATAGAACAAAGACTACCCTCCCCTGAATAACAAGGAATTCTTCCATCACACTGCCTGTGTCCTCAGACTTCAACTCTTCCCTGGTCTCTAGCCTGCTCACTCCTTCTCCTGGAGATTTTTAACTTGCACCTCTACAATCCTGTGAGCCAATTCCTTAGAATAAAATCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTTCTCTCTCTCTCTTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTACTCTCTCTCTTGCTCGCTGTCTCTCGGTTTGTGGGTTTGTTTCTCTGGAGAGCCCTGAATAATACATACATTGTTACCTAACAAGTTGGCAGAGTTATCCAGCACCTCCAAAATATCAGTTCTCAGCCTCTTTGTTGTAAGTTTGGTGAGGATCAACAGGCAACAACGGAGTCAGAGTATTAAAAATAAATAGTAGATT 129645 130145
3_170835 3 NC_000003.10 170835 GCGAACAACCCTCAGGAAATACCAGTGTGAATCATTTTTTCTCCTTTAGAAACAATTTTTATTTCCTAAATTTGGTCTGCTATAAAATGGTAATTTGTGAAGCTCCAGAATTATTGGTTCAATTTTGAATAGTAATTATAACTAAGGGTATGTGTAATTGACTCAAGTTACTAATGACCACCCTTTTCCTAATTATTCAATATTATTTCAGTTAATATTTATTAAGCATTCTTTTGTCAGCCTGACACTGTGCTGGTTTCTTTCAGAGATGTCAAAGAGGTTTACACATTTCTTCTGGCTTCAAGGAGTTTGTAATCTAACTGGAGAGGGAAGACTCATCCATTGAAACTATATGGGCATCTAATTTCTCCTCCATGTGATATCTCTAATAGCCAGCCAGGTTTAGATTTATTATCCAAAAAACATGATTTCAGGTTTCCAAAGGTAGCCAAAAGGATCACACCTCAATGTTCAATTCTTTTCAAGCTTCTGCTTGCATCA 170585 171085
3_873737 3 NC_000003.10 873737 AAGGGAAGGGGCTAGGGCTCAGGCAGGGCCTCCGGGGAGCATCCAAAGTTATGTCTCTTCAGATTCTATTCCCTAAACTTGGTGGAGGTCCTCTGTGTCCAATGTGTCTGTATTCTTTATACCTTACCCATATTGTACAAATGCTTTATTTCTATTCAACATTTAGAAGACAATCATAAACAAAATGCATTAAATAGCAAGATGGCAAATGAACCTCAGGAAGGAACATCAGGAACATCCATGAGGTTCCATCCACGGAACCTCACCATGGATACGCTTGTGATCAAGGGCCTTGTCTCCCCTCAAGACAGTCAGAGATCAGAGGCTGCCCTCATCATAGCAGTGGAACAGGACCAGCTGGGACAGGGTCCTTCTGTGACACCTGCTGTGTCACCAGGCTGTGCGAATGGACTCAGCTGCCCGAACTCACAGAATATCAGTAACAGCACCGAAACTTCACAGGAAAAATGGTAAGTTGTAAGTTTCTCCATTAATAGTAAC 873487 873987
3_873835 3 NC_000003.10 873835 CCAATGTGTCTGTATTCTTTATACCTTACCCATATTGTACAAATGCTTTATTTCTATTCAACATTTAGAAGACAATCATAAACAAAATGCATTAAATAGCAAGATGGCAAATGAACCTCAGGAAGGAACATCAGGAACATCCATGAGGTTCCATCCACGGAACCTCACCATGGATACGCTTGTGATCAAGGGCCTTGTCTCCCCTCAAGACAGTCAGAGATCAGAGGCTGCCCTCATCATAGCAGTGGAACAGGACCAGCTGGGACAGGGTCCTTCTGTGACACCTGCTGTGTCACCAGGCTGTGCGAATGGACTCAGCTGCCCGAACTCACAGAATATCAGTAACAGCACCGAAACTTCACAGGAAAAATGGTAAGTTGTAAGTTTCTCCATTAATAGTAACTCTCAGATTAGTCTATGTCATCCATCGCTTCTCCATTAAATAACTTTTTATAGCTTTACATGGGTCGATTTTTCAATTTATATTTTATTTTACTAACT 873585 874085
3_875203 3 NC_000003.10 875203 CCCTCAGACTTGAATCGCAGCACCAGCTCTTCCCCGGATCTCCAGCTTGACGACCTTCAGACTTAAACAACAAAAGAATCAGCTCCTCCCTGGGTCTCCAGCACCACAACCCACAAACTAGAAGAACACCACTCCCCCATGGATCTCCAGATCCATGACCCTCACACTAGAACACCAACACCTGCTCCTCCGTGGGTCTCCAGATCCACGAACCTCACACTGGAACACCAACACTGGCTCCTCTGCGGGTCTTCAGCTCCACAACCTAAGACATCAGTGGCAGCATTGGCTCCTCCCATGGATTCCAGCTCCAAGACCCTCACATTTAAACTGCAAGACCACCTTCTCCCTGTATCTCCAGCTGCACAACCCTCAAACTAGAACATCAGCTCCTCCAATGGTCTTCAGCTGCACGAAACTCAAACTAGAAAAACAACAGCTCCTCCCTGGGTCTCCAGCTCTGCAACCATCAAACTAGAACACCATCAGCTCCTCTCCAGG 874953 875453
3_876424 3 NC_000003.10 876424 ACTAGAAGAACGTCACTCCCCCATGGATCTCCAGATCCACACCCTCACACTAGAACACCAACACCGGCTCCTCTGTGGGTCTTCTGCTGCACAATCTAAGACATCAGTGGCAGCATTGACTCCTCCCATAGATTCCAGCTCCAGGACCCTCAGATTTGAACCACAAGACCACCTCCTTCTTGGATCTCCAGCTGCACAACACTCAAACTAGAACAACATCAGCTCCACCCCGGGTCTCCAGCTCCATTACACTCAAATTAGAACAACATCAGCTCCTCTTTGAGTCTCCAGCTGAAAGATCGTAAAACAAGGACAACATCAGCTCCTTCCCGAGTCTTCAGCTGCAGGGCACTCAAACTAGAACCCTCCCCCGTCTTCAGCTGCACGACCTTCAGACTAGAACATCAGCAACTCTCCTGGTCTCCAGCTGCAGGATACTCATATTAGAAAAACGCCAGCTCCTCCCGGGTTCTACAGCTGCATGACCCTCAAACTAAAAAA 876174 876674
3_877046 3 NC_000003.10 877046 CCAGATCACGGCCCTCAAACTAGAACATTAGCTCCTTCCCGAGTCTTCAGCTGCACCACCCTCAACCTAGAACATCGGCTCCTCTCTGGGTCTCTAGCTGCTGGACACTCATACTAGAAAAACACAAGCTCCTCCCAGGTTCTACTGTTGCACGACCCTCAAACTAAAAAACAACCGCTCCTCCTCAGGTCTCCAGGTGCATGAACCTCAAACCAGAACAACATCAGCTCATCCCCGGGTCTTAAGCTCATGGCCCTCAAACTAGAACATCAGCTCCTCCCTGAGTCTTAAGCTGCACAACCCTCAATTGAAAGCATCAGCTCTTCTCCAGGTCTTCAGCTGCAGGACACTCACACTAGAAAAATGCAAGCTCCTCATGGGTTCTACAGCTGTATGACCCTCAAACTAAAGAAACACCAGCTCCTCTCTGGGTCTCCAGCTCCATGACCCTCAAACTAGAACCAAATCAGCTCCTCTTTGCATCTCCAGTCGCATGGCTCT 876796 877296
3_1723604 3 NC_000003.10 1723604 GGATCGAGAACTAGAAATATCATTTGACCCAGCAATTCCATTACTGGGCATATTCCCAAAGGATTGTAAATCATTCTACTATAAAGACATATGCACACATATGTTTACTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTTCATCAATAATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAAGGATGAGTTCACGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCGTCTTTCTCAGCAAATTATCACAAGATCAGAAAACCAAACACTACATGTTGTCACTCATAAGTGGGAGTTGAGCAACGGGAACACATGGACACAGGGAGGGAAACAACACACACCACGGCCTGTTGGGGTCGGCGGGCTAGGGGAGGGAAAACATTAGGAGAAATACCTAATGTATGTGATGAGTTGATGGGTGCAGCAAACCACCATGGCACGTGTATACCTACGTAAC 1723354 1723854
3_1922335 3 NC_000003.10 1922335 AACTATGTATCCTTTGTTGGTCTTTCTTTTGTTTTTCCTCCCAAATACCTAACTTTGTCTCTTGTTCCTCATTTCCAGAATTAAATTTTAGCCCAAGATGTCAATATATGCATAACCATATCAAATATGTGAGTATTAACTCATTATCTACCAGCTCCTCAAACATTTATAATACAAAACACAAAATAAATAGGATTCAATTCTTGTTGATTCAACCTAGTTGAGAATAGATAGTCCAGTTAACAAAAAAATGATGAACACAAAGGGAAAGAGGAGAGGAACCCGATATATGTTCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCCACATATATGTGAATCTATAAGAAAGGTGATATTACAGACATCAAGGGAATGGGCACTGTTCAAAAAGGAACGCCCCACAAGTGTTACCATGGCAAAACTGGAAGAGTCTATAATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGGGCAAGATTCTTG 1922085 1922585
3_1954604 3 NC_000003.10 1954604 AGGATCTAGAACTAAAAATACCATTTGACCCAGCAATCCTATTACTGGGTATATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTACTGCAGCACTATCCACAATAGCAAAGACTTGGAACCAACCCAAATGCCCATCAATGATAGACTGGATAAAGAAAATGTGGCACATATAAACCATAGTATACTATGCAGCCATAAAAAGCATGAGTTCATGTCCTTTGCAGGCACATGGATGAAGCTGGAAACCGTCTTTCTCAGCAAACTAACACAGGAACAGAAAACCAACACCACATGTTCTCACTCATAAGTGAGAGTTGAACAATGAGAATATTTGGGCACAGAGAGGGGAACATCACACACCAGGGCCTGTTGGGGGAGTGTGGGGCAAGGGGAGGGATAGTATTAGGAGAATTATCTAATGTAGATGACAGGCTGATGGATGCCGCAAACCACCATGGCACATGTATGCCTGTGTAA 1954354 1954854
3_3384042 3 NC_000003.10 3384042 GATCACTTGAAGCCAAAAGTTGAAGATTAGCCTGGCCAATATAGTGAAACTCTGTCTCTACAAATAATAGAAAAACATAACTAGGCAACATAGCACATGCCTGTAATCCTAGCTACTCAGGAGGCCAAGGCAGGAGGATCCTTTGAGCTCAGGAGTTTAAGGTTGTAGTGTGTCATGATTGTGCCACCACATCCAGCCTGGACAATAGAATGAGACTCTGTCTCAAATATATACATATATGTTTTTTGATATACATATGTGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGATATATTTTTTTATTTTTTCTCCATGCATCCTATTGGTAGTGTGCGTAAATTTGCGGTCCTGTTTCAAACTTGGTTAACTTTCATATCACAGACTCACAGAAAGGAGACTTGGAAGCAAACTCAGCAGTTATCTATGCCAATGTCCTCATTTTGCAGATGATCAAAATAAGACAAGACAATGTTAAATGACGTGGAG 3383792 3384292
3_4342279 3 NC_000003.10 4342279 ACCCCACAGAGAAAGATAGGGGGAGAAAGGAAGAAAGAAAAAAAAGACCAAAAACAGAAAGAGAAAAGGGACCAAGGACAAATTGTAGCAGCAAAGGGAAAGCAATTCTGGAAAACCAATTCAGCCTGTACTACTGAGAAGTCCATACATCAGTGGCAGGCACGAAGGTGGCATATATGTATGTGTGTGTGTGTGTATATATGTGTGTGTCTGTGTGTGTATATATATATATATGTATGTATATATCTGTGTGTATATATGTGTACACACACACACACACACACACATATATGCATAGGTTGCTGTTATTTCTACTGAATTTTAAGGTGTCTAAGTGCAGTCTGGAGGGCTTTAAGGAAAGCACAGTTTTAGTTTCTAGTGATTCCAACTCAGAAAAATGGGATAAAAAAATTGATTAATGTTAGTTTGGAAACATGTAGTCAAGAAAGAATTCAGAATCCAGTCCAAATAAATTGTAGACAAATAATAAAAACTGAAAAA 4342029 4342529
3_4876340 3 NC_000003.10 4876340 AGGCTGCAGTGAGCTGTGACTGTACCACTGCACAACAGACTGGGTGACAGAACAAGACCCTGTCTCAAAAAATAAAAACTTAAAAAAAAATTTTAACGGGCAAAAGGCTTGAATAGACATTTTTCCAAAGAATTCATACAAGTGGCCAACAGGTATATGAAAAGATGCTCAACATTGCTAATCATCATGGAAATACAAATCAAAACCACGAGATATCACCTCACACCTGTTAGGATGGCTATTATTTGAAAGCAACAACAACAACAACAAAACCCAGGATATAACAAGTGTTCGTGGGGATGTAGAGAAATGAAAGCGCTTGTGCCCTGTTGGCGGAAATGTAAAATCATACAACTGCTATGGAGCATAGCATAATTTTCCTAAAAAATTAAAAGTAGAGCTACTATATGATCTAGCAATCTCATTTCTGGGTATTTATCTAAAAGAATTAAAATAAGATATCTGCATTCCCATGTTAACTGCAGCATTGTTCCCAACAGC 4876090 4876590
3_6219590 3 NC_000003.10 6219590 ATCCACAGATGCTCAAGTCCCTGATATAAAATGTCGTAGTATTTGCACATAAACTATGCACATCCTCTCATATACTTTAAATCATCCCAAGACTACTTATGATACATAATACATACTGTTTAAATGCTACGTAAATAGCTGTTATACTGTATCATATGGAAAATAATGACAAAAAAGTATGTACTTCTTCAGTACAGACACACTTTTTAAAAATATTTTGATACGTGGTAGGTTGAATCCATTGATGCAGAACCCATGGATACAGAGGACCAACTGTATACCTGCATCAAGCTTTCTGAACACCCATGACATGATTTCTCTTATTTTCCAAAATTATCCAAGCATGTCAAATGTCATTCCACTGTGCAGCTTTTCTGGATTATGCTAGAATAATTATTTGCTAGCTATAATATACTCCTATAGTATTCCTACAAGTTTCTTTTATTTCCTATTACTGACAGTAATATTTTCTACTCACTGTATTGGACCATGAGAAAGTAT 6219340 6219840
3_6426391 3 NC_000003.10 6426391 TCCAGCCTGTGGAGTCTAAGAGATCTGTGCACATCTTGGGTGTGCCACTCACTGGTCGGATGTCCTTGCTGACATTTTTAGCTTTAGCGTCTTAGTAAAACATGTACAAAACGGAGACTGTATTTGAGTTCTCCAGAGAAGCAGAACCAATAGGATGTATTTTTGTAGAGAGAGAGATATTTATTTTATTTTTTTTCTGCAAGAGATATTAACCTTATTCTTTCATACCCCAACATAATTTCTACTTAGTTCCTCAATCTGCTTGTGGTGAAAACTTTTCAGTCAGTTCAGAGGGACCTCTGTCAAATCTTGCTTCAAAGAGAATAAAATACCTAGGAATCCAGCTTACGAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAATGAAATAAAAGTGGACAAACACAAATGGAAAAACATTCCATGCTCATGGATAGGAAGAATCAATATCATGAAAATGGCCACAGTGCCCAAGGTAATTTATAGTT 6426141 6426641
3_6942009 3 NC_000003.10 6942009 AGAATGGAGTAAAGAAAGAGAAAAGCAAAAGTAATCCATCTAGAGAAGACTTACTTTTGGGCAATCCCTCATCGTATAATCATGTGTATTTCTTCCTTCCATTTCATGCTTTACTCTATATAGGCATTTAATAGTTTGTCTTCCACATATTTTAAGTTCCATTAAGGAGATTGATGTCTGCTGGCATTTTGTTTTCTGGATTCCAGGCACTTAGCAAAGTCCCTCAATAAGCATTTGTTGAATGAATGCATGAATTAATGAATGAATGAATCAATCAATTTAACTTCAAACTCAGCACCCTTCTCAAAAGAGTTACCTGCTTTATACCATACTTGAGAAGGTTACGTTGTTTTATCATTAGGCCAAAATCGAATCAATCAATCAATTTAACTTCAAACTCAGCACCCTCCTCAGATGAGTTACCTGCTTTATACCATACTTAAGAAGGTTATGTTGTCATATCATTAGGTCTAAAAGAGAAACCAGGATCTTGATTTTAGA 6941759 6942259
3_7220126 3 NC_000003.10 7220126 CAACCTCTCTTCATGTCTCCTTCCATCTACACACCCTTCCTAGCCTTTGGTATCTATCATTCTATTCTCTACGTCCATGAGATCAAGTGTAGCTCTCACATATGCGTGAGAATATGTAGCATTTGTCTTTCTGTATCTGGCTCATTTCACTTAACATAATGACCTACAGTTTCATCCATGTTGCTACAAATGACATGTATGCATTATTTTTTATGGCTGAATAGTATTCCATATCGTGTACGTGTGTTTGTGTGTGTATATATAGATATAGATATATATCTCATATTTTCTTTATCTTTCACCCATTGATGGGCTCTTAGGTTGATTCCATATCTTGGCTATTGTGAATAATGCTGCTCTAAACATGTGAGTGTGGGCATCATTTTTATATACAGCTTTCTTTTTTCTTTGCATAAATATGCAGTAGTTGGATTGCTGGATCGTATGTTAGTTCTATTTATAGTTTTTTGAGAAATCTGCATACTGTTTTCCATAGTGGTT 7219876 7220376
3_8689724 3 NC_000003.10 8689724 CCAGGAATATGAGGAGGAATATCACCAGGTGGATGCACACCCACTGCTATCTTGGGAGTAACGTCATACGCCATCCTCTGGAGATGATATTCGGATCAATATCACTGGGTGGGTGTACACCTGCTGCGATATTGAACGTAATATCATGCTCTCTCCCTCTCTGGACATTAGGAACAATATCATAGGTGGGTGTACACCCACTGAGGTATTAGGCATAATATTCATATTAATTCTTCCTCATTTAATATAAACATGAATATGTATTACCAATATTAATATTAATATTAAGAAATCATTGCTAATAGTGTTCAGATTATTAATATTAATATTAATTATTACAAGCTAATATTACTGTTTTCTAATGAATAAGATCAATATCACTTATTAATACCAGGCATCATTAATATTAATCATTTATTGTTATCGTTAGTATAACTCTTTAATATGAATTATCATTATTATCGGTATTGATTTTAACAATTACATGATCAGTTATTAATA 8689474 8689974
3_8705970 3 NC_000003.10 8705970 CACCCCCATGCTGAACCCTTTCATCTACAGCCTGAGAAACAGGGACATTCAAAGCACCCTGAGGAGGCTGCTCAGCAGAACAGTCGAATCTCATGATCTGTTCCATCCTTTTTCTTGTGTGGGTGAGAAAGGGCAACCACATTAAATCCCTACATCTGCAAATCCTGCCCCTTAGTCACATTATTTTTGTGGCTTGATGGCTTTTATTCCTTTCTGCATTTCCTATGTGAATATTGTTTTCTTCGTTATACCTTTCACTGGAATGGGTGAGGATTCTGGGATCCTTTGTTTAGCAGAAACCTCATGACTGAATCCTCTATACCTAGGTGGCCTCCTTTAGTTTCTGAGCAATAACCCTGTCATCCAGGTGGAATCACAACCATCTTTTTATATACGTGAAGTCCTCACTTCATTTTGGAATTCCCTGAAAATTGCCTTTATGGAAACAATGTACAGCAGGTCCTCCAACACCATTGGTGCGTTCAAAGTTGTGTAGTTATA 8705720 8706220
3_8706042 3 NC_000003.10 8706042 CAGCAGAACAGTCGAATCTCATGATCTGTTCCATCCTTTTTCTTGTGTGGGTGAGAAAGGGCAACCACATTAAATCCCTACATCTGCAAATCCTGCCCCTTAGTCACATTATTTTTGTGGCTTGATGGCTTTTATTCCTTTCTGCATTTCCTATGTGAATATTGTTTTCTTCGTTATACCTTTCACTGGAATGGGTGAGGATTCTGGGATCCTTTGTTTAGCAGAAACCTCATGACTGAATCCTCTATACCTAGGTGGCCTCCTTTAGTTTCTGAGCAATAACCCTGTCATCCAGGTGGAATCACAACCATCTTTTTATATACGTGAAGTCCTCACTTCATTTTGGAATTCCCTGAAAATTGCCTTTATGGAAACAATGTACAGCAGGTCCTCCAACACCATTGGTGCGTTCAAAGTTGTGTAGTTATAATGTTGGTGAGGAATAAGTGGTTTCACTATACCTAATTTTGCTTCAAGGTGAAGTTTCCAAGAGACTTTCAA 8705792 8706292

Total number of rows: 3095657

Table truncated, full table size 1683871 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6134.txt.gz 110.2 Mb (ftp)(http) TXT

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