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Platform GPL6096 Query DataSets for GPL6096
Status Public on Nov 08, 2007
Title [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Mar 11 17:52:08 2009 PDT
#%chip_type=MoEx-1_0-st-v1
#%lib_set_name=MoEx-1_0-st
#%lib_set_version=v1
#%genome-species=Mus musculus
#%genome-version=mm9
#%genome-version-ucsc=mm9
#%genome-version-ncbi=37
#%genome-version-create_date=2007-07
#%netaffx-annotation-date=2009-03-16
#%netaffx-annotation-netaffx-build=28
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=moexon-st
http://www.affymetrix.com/analysis/index.affx
Submission date Nov 08, 2007
Last update date Mar 06, 2018
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (2823) GSM241928, GSM241929, GSM241930, GSM241931, GSM241932, GSM241933 
Series (224)
GSE9566 A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes
GSE11063 Expression data from E11.5 mouse embryonic forelimbs - various mutant conditions or dissected limb domains
GSE11077 A Genome-Scale Analysis of the Cis-Regulatory Circuitry Underlying Hedgehog Mediated Patterning of the Mammalian Limb
Relations
Alternative to GPL6538
Affiliated with GPL6193
Alternative to GPL9524 (Alternative CDF)
Alternative to GPL11410
Alternative to GPL13712 (Alternative CDF)
Alternative to GPL14363 (Alternative CDF [Brainarray Version 11.0.1, MoEx10stv1_Mm_ENSGl])
Alternative to GPL14615 (Alternative CDF [MoEx10stv1_Mm_ENST, version 13])
Alternative to GPL15251 (Alternative CDF)
Alternative to GPL15408 (Alternative CDF)
Alternative to GPL15555 (Alternative CDF [Brainarray Version 14.1.0, MoEx10stv1_Mm_ENSGl])
Alternative to GPL16116
Alternative to GPL16682 (xmapcore Ensembl mouse version 62)
Alternative to GPL17946 (alternative)
Alternative to GPL19108 (Alternative CDF)
Alternative to GPL19877 (Alternative CDF)
Alternative to GPL23018 (AltAnalyze)
Alternative to GPL23148 (Alternative probe groupings)
Alternative to GPL24139 (noncoder version)
Alternative to GPL24699 (Ver. 22.0.0, MoEx10stv1_Mm_ENSG)

Data table header descriptions
ID transcript_cluster_id
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
total_probes Total number of probes contained by this transcript cluster
gene_assignment Gene information for each assigned mRNA for mRNAs that corresponds to known genes
mrna_assignment Description of the public mRNAs that should be detected by the sets within this transcript cluster based on sequence alignment
category Array design category of the transcript cluster

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP total_probes gene_assignment mrna_assignment category
6747200 chr1:3018698-3044814 chr1 NC_000067.5 + 3018698 3044814 12 --- GENSCAN00000037374 // ENSEMBL // cdna:Genscan chromosome:NCBIM37:1:3018707:3044814:1 // chr1 // 100 // 67 // 8 // 8 // 0 main
6747201 AK143492, AK149257 chr1:3048143-3048338 chr1 NC_000067.5 + 3048143 3048338 4 --- AK143492 // GenBank HTC // Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860019P17 product:unclassifiable, full insert sequence. // chr1 // 75 // 100 // 3 // 4 // 0 /// AK149257 // GenBank HTC // Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930002L12 product:unclassifiable, full insert sequence. // chr1 // 75 // 100 // 3 // 4 // 0 main
6747202 AK016604 chr1:3063355-3063577 chr1 NC_000067.5 + 3063355 3063577 4 AK016604 // 4933401J01Rik // RIKEN cDNA 4933401J01 gene // --- // 71042 AK016604 // GenBank HTC // Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933401J01 product:unclassifiable, full insert sequence. // chr1 // 100 // 100 // 4 // 4 // 0 main
6747203 AK016604 chr1:3063748-3063805 chr1 NC_000067.5 + 3063748 3063805 4 AK016604 // 4933401J01Rik // RIKEN cDNA 4933401J01 gene // --- // 71042 AK016604 // GenBank HTC // Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933401J01 product:unclassifiable, full insert sequence. // chr1 // 100 // 100 // 4 // 4 // 0 main
6747204 chr1:3064259-3064287 chr1 NC_000067.5 + 3064259 3064287 2 --- --- main
6747205 AK016604 chr1:3064311-3064360 chr1 NC_000067.5 + 3064311 3064360 4 AK016604 // 4933401J01Rik // RIKEN cDNA 4933401J01 gene // --- // 71042 AK016604 // GenBank HTC // Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933401J01 product:unclassifiable, full insert sequence. // chr1 // 100 // 100 // 4 // 4 // 0 main
6747206 chr1:3112343-3113412 chr1 NC_000067.5 + 3112343 3113412 8 --- --- main
6747207 chr1:3145431-3146149 chr1 NC_000067.5 + 3145431 3146149 4 --- --- main
6747208 chr1:3153710-3153769 chr1 NC_000067.5 + 3153710 3153769 4 --- --- main
6747209 chr1:3167659-3167814 chr1 NC_000067.5 + 3167659 3167814 4 --- --- main
6747210 chr1:3197150-3201191 chr1 NC_000067.5 + 3197150 3201191 9 --- GENSCAN00000037376 // ENSEMBL // cdna:Genscan chromosome:NCBIM37:1:3197150:3201191:1 // chr1 // 100 // 56 // 5 // 5 // 0 main
6747211 AK038205, AK146560, AK150256 chr1:3229741-3230058 chr1 NC_000067.5 + 3229741 3230058 4 --- AK038205 // GenBank HTC // Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130086L06 product:unclassifiable, full insert sequence. // chr1 // 100 // 100 // 4 // 4 // 0 /// AK146560 // GenBank HTC // Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920026K17 product:unclassifiable, full insert sequence. // chr1 // 100 // 100 // 4 // 4 // 0 /// AK150256 // GenBank HTC // Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530149J17 product:unclassifiable, full insert sequence. // chr1 // 100 // 100 // 4 // 4 // 0 main
6747212 chr1:3238723-3238757 chr1 NC_000067.5 + 3238723 3238757 2 --- --- main
6747213 chr1:3240220-3240253 chr1 NC_000067.5 + 3240220 3240253 4 --- --- main
6747214 chr1:3267219-3267429 chr1 NC_000067.5 + 3267219 3267429 4 --- --- main
6747215 chr1:3318552-3318959 chr1 NC_000067.5 + 3318552 3318959 4 --- --- main
6747216 chr1:3319687-3320015 chr1 NC_000067.5 + 3319687 3320015 4 --- --- main
6747217 chr1:3345572-3346132 chr1 NC_000067.5 + 3345572 3346132 4 --- --- main
6747218 chr1:3362088-3362138 chr1 NC_000067.5 + 3362088 3362138 4 --- --- main
6747219 chr1:3362777-3362944 chr1 NC_000067.5 + 3362777 3362944 4 --- --- main

Total number of rows: 283952

Table truncated, full table size 60159 Kbytes.




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