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Platform GPL5346 Query DataSets for GPL5346
Status Public on Jun 05, 2007
Title JCVI PFGRC Aspergillus fumigatus 22K v3 array designed primarily based on strain Af293
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Aspergillus fumigatus
Manufacturer JCVI PFGRC
Manufacture protocol 3QAF, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Support glass
Coating aminosilane
 
Description This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jun 01, 2007
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (8) GSM417494, GSM417495, GSM417496, GSM417497, GSM483497, GSM483498 
Series (3)
GSE16630 Functional genomics of Aspergillus fumigatus conidiospores interacting with human bronchial epithelial cells
GSE16637 Transcriptomic analysis of interactions between Aspergillus fumigatus conidiospores and human bronchial epithelial cells
GSE19430 Functional genomic profiling of Aspergillus fumigatus biofilm reveals enhanced production of the mycotoxin gliotoxin

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene Symbol
Strain Af293 Target map of strain Af293

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain Af293
3QAF00001_A_1 ATGGCTCACATCACCACCCAAAAACACCCATCACCTTCCTCCTACATCACCCAGAAGAGTGGACACAATT 48.57 32 37 Af293 Afu8g06820 hypothetical protein Afu8g06820::70::100.0::1.5E-11::+
3QAF00001_A_10 TTCTTCGATCCGAAAAGAGACAGGCTATGGAACCAAGCTGGTAGTAGTGCAGTTCTACTTGTCGAAATGG 45.71 28 91 Obsolete Obsolete Obsolete
3QAF00001_A_11 TGCCAGATCCCCAACTTCTTACTCTACAGACTTGTCCAACTGGTCAAGGCAAAGGAGTGGAGAGAATGGA 48.57 31 114 Obsolete Obsolete Obsolete
3QAF00001_A_12 TTCCCTCCGCTGCCTACCCCTCCAGCCAAGTTAAAGGAAGAACTCCACGAAGCACGCAACAAGTGCATTC 54.29 32 70 Af293 Afu3g15310 C-methyl transferase Afu3g15310::70::100.0::1.8E-11::+
3QAF00001_A_13 GGCAATGAACAACATGAAGACGCACGTATGTATGCCCAAAACAGTGCCAGAAGAAAGCAACGAATCATGA 44.29 31 71 Obsolete Obsolete Obsolete
3QAF00001_A_14 CTTGTGCGAGGGTAGTGGGTGGGCCAGCGGAAAGGGTATCCTTCAGAAGAAGACCATCGCTGCAGATCTT 55.71 30 83 Af293 Afu7g00750 hypothetical protein Afu7g00750::70::100.0::6.4E-11::+
3QAF00001_A_15 AGGCGAAAAGCTTGGAAGCTCTCGGCTTCGGCCTGAACCTATCAATCGACGATGACAGGAACAACGTCAA 51.43 29 80 Obsolete Obsolete Obsolete
3QAF00001_A_16 TGATTTCTTAATACCTGAAAAGAAGTTGGCAATCGAGCTGCTGAAGGACTACGATCGAATGGATGAGTGA 41.43 29 80 Obsolete Obsolete Obsolete
3QAF00001_A_17 TGTGCAAATGCCTCTCGTCCAGCGCCTCAAGGTTTCGTCAGCATTTGCGTCTCGTTCATTGTGGGTTTAA 50.0 31 81 Obsolete Obsolete Obsolete Afu8g06100::61::100.0::6.4E-9::+
3QAF00001_A_18 TCTTCCTCCACCTGGCCAGTTTCTTACCAATGACGTTTCTCACTATAAAGAGGACTTTGGCCCTGATATC 45.71 28 71 Obsolete Obsolete Obsolete
3QAF00001_A_19 TGAAATATGCCTCATCTCATCCAGGCTCTGGTGCTTTTTCCCGTCCTGCCATTCTGAGCAACCTGTTGCG 51.43 30 68 Obsolete Obsolete Obsolete
3QAF00001_A_2 AGCGTACAAGCGAGTTCGTTCATCTACAATACATTTTCAGCTCACCCGCGAGTATCAAAACATCCAAAAG 42.86 31 70 Af293 Afu4g04610 ubiquitin-conjugating enzyme e2-28.4 kda Afu4g04610::70::100.0::6.5E-11::+
3QAF00001_A_20 AAAGGCTGCCCAGATATTTAGTGTCCCTGAATCCTCCCTTCGCAAGCAGCTATCTGGAGTCAAACCATAA 47.14 29 91 Obsolete Obsolete Obsolete Afu2g03570::67::97.01493::2.5E-9::+
3QAF00001_A_21 ATTCAGGAACCTGTTCTTGATGACCGTTTTCGCTGCGCCCTTGCTGGCTATTATTTGGCGTGCATATACC 48.57 29 54 Obsolete Obsolete Obsolete
3QAF00001_A_22 TGTCCGGCGTGGAGCTGACATCTGCATCCTCCGGAACCCTTGCGAGAACGACAAGCCAACGCTCAACGTT 58.57 29 91 Af293 Afu1g03310 conserved hypothetical protein Afu1g03310::70::100.0::4.0E-11::+
3QAF00001_A_23 GGTGAAGTACTTCAATCTACCGCTTCCGAAATGATGCAGGAGTGCGCGATGAACGAAAAGAAAAACAACT 44.29 30 64 Obsolete Obsolete Obsolete
3QAF00001_A_24 AAACCGGAGTACGGAGCAGAGGACTACGGTGCTGATCCGATCCCCCGCAATCCGTCGGATGTCGGAAGGT 60.0 29 106 Af293 Afu2g02900 hypothetical protein Afu2g02900::70::100.0::6.2E-11::+
3QAF00001_A_3 ATGCGAGGCCCTATCAACTGGCGGATACTGATGAAACATCTCCGAAGTTCCAATATTGATGCTATCCCGT 47.14 29 93 Obsolete Obsolete Obsolete
3QAF00001_A_4 TGGCAATGGAAGAGCTAAGTGAGATTAAGCAAGTGCTATCAAAGCCTTATCATGACCTCGCAGACGTCTT 44.29 30 93 Obsolete Obsolete Obsolete Afu3g04280::70::97.14286::1.4E-10::+
3QAF00001_A_5 ATGACTCGCACTGAAATGACAAATTCTCTTACTCTTCATCAACATCATCATGATCAACGCTGGTTTCGAT 38.57 33 73 Obsolete Obsolete Obsolete

Total number of rows: 10503

Table truncated, full table size 1814 Kbytes.




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