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Platform GPL5188 Query DataSets for GPL5188
Status Public on May 21, 2007
Title [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Mar 11 17:51:22 2009 PDT
#%chip_type=HuEx-1_0-st-v2
#%lib_set_name=HuEx-1_0-st
#%lib_set_version=v2
#%genome-species=Homo sapiens
#%genome-version=hg18
#%genome-version-ucsc=hg18
#%genome-version-ncbi=36
#%genome-version-create_date=2006-03
#%netaffx-annotation-date=2009-03-16
#%netaffx-annotation-netaffx-build=28
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=huexon-st
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date May 21, 2007
Last update date Jul 10, 2014
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (9395) GSM226363, GSM226364, GSM226365, GSM226366, GSM226367, GSM226368 
Series (208)
GSE8945 Expression data from RNAi knockdown HeLa cells
GSE9342 Expression Analysis of 17 human T-ALL cell lines
GSE9385 Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon arrays
Relations
Alternative to GPL6608
Alternative to GPL7149
Alternative to GPL7557
Affiliated with GPL5175
Alternative to GPL9113 (Alternative CDF)
Alternative to GPL10520 (Alternative)
Alternative to GPL10585 (Alternative CDF [HuEx10stv2_Hs_VEGAE_v10])
Alternative to GPL11028
Alternative to GPL11440
Alternative to GPL18935 (alternative)

Data table header descriptions
ID probeset_id
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
probe_count Total number of probes in this probe set
transcript_cluster_id Unique identifier for the transcript cluster containing this probe set.
exon_id Unique identifier for the exon cluster containing this probe set.
psr_id Unique identifier for the probe selection region containing this probe set.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes.
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update.
level Level of design-time annotation support for the probe set.
probeset_type Array design category of the probe set.

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment level probeset_type
2315101 NR_024005, NR_024004, AK093685 chr1:1788-2030 chr1 NC_000001.9 + 1788 2030 4 2315100 1 1 NR_024005 // MGC13005 /// NR_024004 // MGC13005 /// AK093685 // MGC13005 NR_024005 // chr1 // 100 // 4 // 4 // 0 /// NR_024004 // chr1 // 100 // 3 // 3 // 0 /// AK093685 // chr1 // 75 // 3 // 4 // 0 extended main
2315102 NR_024004, NR_024005, AK093685 chr1:2520-2555 chr1 NC_000001.9 + 2520 2555 4 2315100 2 2 NR_024004 // MGC13005 /// NR_024005 // MGC13005 /// AK093685 // MGC13005 NR_024004 // chr1 // 100 // 4 // 4 // 0 /// NR_024005 // chr1 // 100 // 4 // 4 // 0 /// AK093685 // chr1 // 100 // 4 // 4 // 0 extended main
2315103 chr1:2927-2958 chr1 NC_000001.9 + 2927 2958 4 2315100 3 3 --- --- full main
2315104 NR_024004, NR_024005, AK093685 chr1:3229-3751 chr1 NC_000001.9 + 3229 3751 4 2315100 4 4 NR_024004 // MGC13005 /// NR_024005 // MGC13005 /// AK093685 // MGC13005 NR_024004 // chr1 // 100 // 4 // 4 // 0 /// NR_024005 // chr1 // 100 // 4 // 4 // 0 /// AK093685 // chr1 // 100 // 4 // 4 // 0 extended main
2315105 NR_024004, NR_024005, AK093685 chr1:4013-4231 chr1 NC_000001.9 + 4013 4231 4 2315100 4 5 NR_024004 // MGC13005 /// NR_024005 // MGC13005 /// AK093685 // MGC13005 NR_024004 // chr1 // 100 // 4 // 4 // 0 /// NR_024005 // chr1 // 100 // 4 // 4 // 0 /// AK093685 // chr1 // 100 // 4 // 4 // 0 extended main
2315107 DQ786314 chr1:4631-4920 chr1 NC_000001.9 + 4631 4920 4 2315106 5 6 --- DQ786314 // chr1 // 100 // 3 // 3 // 0 extended main
2315108 XM_001722700 chr1:5018-5053 chr1 NC_000001.9 + 5018 5053 4 2315106 6 7 XM_001722700 // LOC100132970 XM_001722700 // chr1 // 50 // 2 // 4 // 0 extended main
2315110 chr1:9330-9568 chr1 NC_000001.9 + 9330 9568 4 2315109 7 8 --- --- extended main
2315112 chr1:15010-15080 chr1 NC_000001.9 + 15010 15080 4 2315111 8 9 --- --- extended main
2315114 DQ786265 chr1:17429-17642 chr1 NC_000001.9 + 17429 17642 4 2315113 9 10 --- DQ786265 // chr1 // 100 // 4 // 4 // 0 extended main
2315116 chr1:18302-18524 chr1 NC_000001.9 + 18302 18524 4 2315115 10 11 --- --- extended main
2315118 chr1:20486-20529 chr1 NC_000001.9 + 20486 20529 4 2315117 11 12 --- GENSCAN00000003929 // chr1 // 100 // 4 // 4 // 0 full main
2315120 chr1:25566-25656 chr1 NC_000001.9 + 25566 25656 4 2315119 12 13 --- GENSCAN00000020708 // chr1 // 100 // 4 // 4 // 0 /// GENSCAN00000027117 // chr1 // 100 // 4 // 4 // 0 /// GENSCAN00000003933 // chr1 // 100 // 4 // 4 // 0 full main
2315122 chr1:25806-25831 chr1 NC_000001.9 + 25806 25831 2 2315121 13 14 --- --- full main
2315124 chr1:27523-27571 chr1 NC_000001.9 + 27523 27571 4 2315123 14 15 --- --- full main
2315126 chr1:41818-41856 chr1 NC_000001.9 + 41818 41856 4 2315125 15 16 --- --- full main
2315127 chr1:55399-55425 chr1 NC_000001.9 + 55399 55425 3 2315125 16 17 --- --- full main
2315128 chr1:60458-60496 chr1 NC_000001.9 + 60458 60496 4 2315125 17 18 --- --- full main
2315130 chr1:42321-42431 chr1 NC_000001.9 + 42321 42431 4 2315129 18 19 --- --- full main
2315131 chr1:42801-42931 chr1 NC_000001.9 + 42801 42931 4 2315129 19 20 --- --- full main

Total number of rows: 1432155

Table truncated, full table size 293260 Kbytes.




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